RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 NDUFAB1O14561 156 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 ZBTB48P10074 688 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 GARTP22102 1010 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 CCT5P48643 541 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 HIRAP54198 1017 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 BRDTQ58F21 947 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 KDM7AQ6ZMT4 941 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 OLIG1Q8TAK6 271 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 ZNF564Q8TBZ8 553 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 ZSWIM1Q9BR11 485 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 TRIM51Q9BSJ1 452 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 ELP3Q9H9T3 547 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 UVRAGQ9P2Y5 699 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 STAM2O75886 525 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 COMTP21964 271 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 CHRNA3P32297 505 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 GBP1P32455 592 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 HPDP32754 393 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 CD151P48509 253 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 GPC3P51654 580 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 CDR2Q01850 454 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 CYP24A1Q07973 514 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 BIRC3Q13489 604 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 SLC5A9Q2M3M2 681 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 MTERF2Q49AM1 385 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 EXOC8Q8IYI6 725 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 KREMEN1Q96MU8 473 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 FAM213AQ9BRX8 229 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 ERP44Q9BS26 406 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 NUP85Q9BW27 656 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 TMBIM4Q9HC24 238 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 CHCHD3Q9NX63 227 aaKnown RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 MTRF1LQ9UGC7 380 aaKnown RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 GTF3C4Q9UKN8 822 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 USP20Q9Y2K6 914 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 MMEP08473 750 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 POTEJP0CG39 1038 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 CYP11B1P15538 503 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 ADSSP30520 456 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 POLGP54098 1239 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-204ENST00000392003 PRKCEQ02156 737 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 VGLL4Q14135 290 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 TCEAL1Q15170 157 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 C9orf131Q5VYM1 1079 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 SEPT14Q6ZU15 432 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 SLC47A2Q86VL8 602 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 DRAXINQ8NBI3 349 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-204ENST00000392003 TAS1R2Q8TE23 839 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 SEMA4DQ92854 862 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 MFSD14AQ96MC6 490 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 RUNDC3BQ96NL0 473 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 POP1Q99575 1024 aaKnown RBP10.31□□□□□ -0.76
COL6A3-204ENST00000392003 SGIP1Q9BQI5 828 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 NTPCRQ9BSD7 190 aaKnown RBP10.31□□□□□ -0.76
COL6A3-204ENST00000392003 POLR3FQ9H1D9 316 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-204ENST00000392003 RABEP2Q9H5N1 569 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 ZNF408Q9H9D4 720 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.31□□□□□ -0.76
COL6A3-204ENST00000392003 PARP2Q9UGN5 583 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 ZNF112Q9UJU3 913 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 COQ4Q9Y3A0 265 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-204ENST00000392003 PODXLO00592 558 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 PHF2O75151 1096 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 TNNI1P19237 187 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 RANBP1P43487 201 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 BPIFB4P59827 614 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 TMEM132BQ14DG7 1078 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 KRT71Q3SY84 523 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 XKR3Q5GH77 459 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 CATSPERGQ6ZRH7 1159 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 ALG3Q92685 438 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 PCDHB18PQ96TA0 734 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 NOCTQ9UK39 431 aaKnown RBP10.31□□□□□ -0.76
COL6A3-204ENST00000392003 EIF3BP55884 814 aaKnown RBP10.31□□□□□ -0.76
COL6A3-204ENST00000392003 SOX10P56693 466 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 RTP1P59025 263 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 ACTR2P61160 394 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 GPR162Q16538 588 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 DCAF12L1Q5VU92 463 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 B4GALNT4Q76KP1 1039 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 SV2AQ7L0J3 742 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 ARMC2Q8NEN0 867 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 ZCWPW1Q9H0M4 648 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 CYP26B1Q9NR63 512 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 TOPORSQ9NS56 1045 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-204ENST00000392003 CNOT8Q9UFF9 292 aaKnown RBP10.31□□□□□ -0.76
COL6A3-204ENST00000392003 TRPC6Q9Y210 931 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 ATP8A1Q9Y2Q0 1164 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 NFASCO94856 1347 aa10.31□□□□□ -0.76
COL6A3-204ENST00000392003 ATMINO43313 823 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-204ENST00000392003 ZNF862O60290 1169 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 ZC3H11AO75152 810 aaKnown RBP eCLIP10.3□□□□□ -0.76
COL6A3-204ENST00000392003 KCNA2P16389 499 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 CHRNB2P17787 502 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 RAB27AP51159 221 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 FMO1Q01740 532 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 NEDD9Q14511 834 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 JAMLQ86YT9 394 aa10.3□□□□□ -0.76
COL6A3-204ENST00000392003 CCDC105Q8IYK2 499 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms