RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 PPP1R9AQ9ULJ8 1098 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 V9GY48 417 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-201ENST00000328923 LAMB2P55268 1798 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 CNTNAP5Q8WYK1 1306 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 KRIT1O00522 736 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 PRDM1O75626 825 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 NTSR2O95665 410 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 KLRC1P26715 233 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 ACADVLP49748 655 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 MPP2Q14168 576 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 TNFAIP8L3Q5GJ75 292 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 SPDYCQ5MJ68 293 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 TMTC3Q6ZXV5 915 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 C11orf74Q86VG3 221 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 U2AF1L4Q8WU68 220 aaKnown RBP12.58□□□□□ -0.4
SHMT2-201ENST00000328923 SEC14L1Q92503 715 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 CAMKK2Q96RR4 588 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 PITPNM3Q9BZ71 974 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 ARMC7Q9H6L4 198 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 ARMT1Q9H993 441 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 NLRC4Q9NPP4 1024 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 SSX2IPQ9Y2D8 614 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 UTP11Q9Y3A2 253 aaKnown RBP12.58□□□□□ -0.4
SHMT2-201ENST00000328923 NOC2LQ9Y3T9 749 aaKnown RBP12.58□□□□□ -0.4
SHMT2-201ENST00000328923 TELO2Q9Y4R8 837 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 FUOMA2VDF0 154 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 MAPK13O15264 365 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 EXOC3O60645 756 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 FGFR1OPO95684 399 aaKnown RBP12.57□□□□□ -0.4
SHMT2-201ENST00000328923 MCM7P33993 719 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 PHKA1P46020 1223 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 EIF2B2P49770 351 aaKnown RBP12.57□□□□□ -0.4
SHMT2-201ENST00000328923 KCNQ4P56696 695 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 GRM2Q14416 872 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 TAF1BQ53T94 588 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-201ENST00000328923 ZNF804AQ7Z570 1209 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 RSPH3Q86UC2 560 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 IFNLR1Q8IU57 520 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-201ENST00000328923 MAGEB6Q8N7X4 407 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 PLEKHO2Q8TD55 490 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 GFM2Q969S9 779 aaKnown RBP12.57□□□□□ -0.4
SHMT2-201ENST00000328923 ERLEC1Q96DZ1 483 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 SEMA4AQ9H3S1 761 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 FAM207AQ9NSI2 230 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-201ENST00000328923 MROH5Q6ZUA9 1318 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 RASGRF2O14827 1237 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 HOXA7P31268 230 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-201ENST00000328923 SLC5A2P31639 672 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 RCVRNP35243 200 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 CD300CQ08708 224 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 THOC5Q13769 683 aaKnown RBP12.57□□□□□ -0.4
SHMT2-201ENST00000328923 RPS6KA1Q15418 735 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 SNRNP48Q6IEG0 339 aaKnown RBP12.57□□□□□ -0.4
SHMT2-201ENST00000328923 ISLR2Q6UXK2 745 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 PIK3AP1Q6ZUJ8 805 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 UNC13DQ70J99 1090 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 NEURL2Q9BR09 285 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 HGH1Q9BTY7 390 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 AASDHPPTQ9NRN7 309 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 ZNF652Q9Y2D9 606 aa12.57□□□□□ -0.4
SHMT2-201ENST00000328923 LRRC53A6NM62 1247 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 FBXO21O94952 628 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 LDHCP07864 332 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 SMIM18P0DKX4 95 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 PCP11498 1178 aaKnown RBP12.56□□□□□ -0.4
SHMT2-201ENST00000328923 AMPD1P23109 780 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 CALML3P27482 149 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 ANKRD40Q6AI12 368 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 CCSAPQ6IQ19 270 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-201ENST00000328923 CLEC4GQ6UXB4 293 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 METTL25Q8N6Q8 603 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 ENAHQ8N8S7 591 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-201ENST00000328923 SPATA5Q8NB90 893 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 ZFP28Q8NHY6 868 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 SYN2Q92777 582 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-201ENST00000328923 ZSCAN10Q96SZ4 725 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-201ENST00000328923 STMN4Q9H169 189 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-201ENST00000328923 ZDHHC18Q9NUE0 388 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 COQ6Q9Y2Z9 468 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 SLC4A4Q9Y6R1 1079 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 RPTORQ8N122 1335 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 PGRMC1O00264 195 aaKnown RBP12.56□□□□□ -0.4
SHMT2-201ENST00000328923 LAD1O00515 517 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 USP1O94782 785 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 PLEKHA8P1O95397 391 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 FGFR4P22455 802 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 CRABP2P29373 138 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 FOXN2P32314 431 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 STX2P32856 288 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 PLTPP55058 493 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 TROAPQ12815 778 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 MKRN3Q13064 507 aaKnown RBP12.56□□□□□ -0.4
SHMT2-201ENST00000328923 PUM3Q15397 648 aaKnown RBP12.56□□□□□ -0.4
SHMT2-201ENST00000328923 NAB2Q15742 525 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 MAN2A1Q16706 1144 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 ANKDD1AQ495B1 522 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 NADK2Q4G0N4 442 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 PDXDC1Q6P996 788 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 RRAGAQ7L523 313 aa12.56□□□□□ -0.4
SHMT2-201ENST00000328923 BAP1Q92560 729 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms