RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 KLRC1P26715 233 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 S100A5P33763 92 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 VHLP40337 213 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 GCLCP48506 637 aaPredicted RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 OCRLQ01968 901 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 KCNH2Q12809 1159 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 PTP4A2Q12974 167 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 SCARF1Q14162 830 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 TXNRD1Q16881 649 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 TBC1D9BQ66K14 1250 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 UBE2Q1Q7Z7E8 422 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 GPBP1Q86WP2 473 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 TDRPQ86YL5 185 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 SMYD4Q8IYR2 804 aaPredicted RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 CDC26Q8NHZ8 85 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 ZNF653Q96CK0 615 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 TUFT1Q9NNX1 390 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 MAGEA13PA6NCF6 341 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 BHMG1C9JSJ3 638 aaPredicted RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 BUB1O43683 1085 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 SRGAP2O75044 1071 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 GUCY1A2P33402 732 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 TAP1Q03518 808 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 FAPQ12884 760 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 CYLC2Q14093 348 aaPredicted RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 C1orf146Q5VVC0 180 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 DUPD1Q68J44 220 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 NAIF1Q69YI7 327 aaPredicted RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 TMEM154Q6P9G4 183 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 KCNV1Q6PIU1 500 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 FBXO33Q7Z6M2 555 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 OGFOD1Q8N543 542 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 FAM163AQ96GL9 167 aaPredicted RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 SNF8Q96H20 258 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 DHX36Q9H2U1 1008 aaKnown RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 NLRC4Q9NPP4 1024 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 AVENQ9NQS1 362 aaPredicted RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 GID8Q9NWU2 228 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 MID2Q9UJV3 735 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 CCPG1Q9ULG6 757 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 F8W8V4 182 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 LSM1O15116 133 aaKnown RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 GJB6O95452 261 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 CPA3P15088 417 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 RXRBP28702 533 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 RPS8P62241 208 aaKnown RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 YWHAEP62258 255 aaKnown RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 ITGA9Q13797 1035 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 WDR44Q5JSH3 913 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 HGSNATQ68CP4 663 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 NCAPG2Q86XI2 1143 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 C12orf56Q8IXR9 622 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 U2AF1L4Q8WU68 220 aaKnown RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 DCAF4Q8WV16 495 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 NCLNQ969V3 563 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 TBK1Q9UHD2 729 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 CIDEBQ9UHD4 219 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 SPATA2Q9UM82 520 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 NIP7Q9Y221 180 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS35-201ENST00000299138 SMIM31A0A1B0GVY4 71 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 KLHL33A6NCF5 533 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 IQCA1LA6NCM1 817 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 SPDYE3A6NKU9 549 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 PDLIM1O00151 329 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 AP3B1O00203 1094 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 GYG2O15488 501 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 MYL4P12829 197 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 TXKP42681 527 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 MCCD1P59942 119 aaPredicted RBP6.76□□□□□ -1.33
VPS35-201ENST00000299138 BNIP1Q12981 228 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 TMED2Q15363 201 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 TRIM16LQ309B1 348 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 DCUN1D2Q6PH85 259 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 OR9Q1Q8NGQ5 310 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 PARD3BQ8TEW8 1205 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 KAT2BQ92831 832 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 MTERF3Q96E29 417 aa6.76□□□□□ -1.33
VPS35-201ENST00000299138 KDM4FA0A1W2PPD8 638 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 PLEKHA8P1O95397 391 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 MARK3P27448 753 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 HSPA13P48723 471 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 EIF2B2P49770 351 aaKnown RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 GRSF1Q12849 480 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS35-201ENST00000299138 FAM98CQ17RN3 349 aaKnown RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 TRIM71Q2Q1W2 868 aaKnown RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 LRRC57Q8N9N7 239 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 TEKT4Q8WW24 435 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 JADE3Q92613 823 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 MTMR8Q96EF0 704 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 LRRC37BQ96QE4 947 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 TRIM15Q9C019 465 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 KLC2Q9H0B6 622 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 RNPEPL1Q9HAU8 725 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 SLC39A2Q9NP94 309 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 MRPL40Q9NQ50 206 aaKnown RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 MTO1Q9Y2Z2 717 aaKnown RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 COL22A1Q8NFW1 1626 aaPredicted RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 RNF103-CHMP3A0A140T963 221 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 GOLGA8JA6NMD2 632 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 MYO1FO00160 1098 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms