RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 SLC25A27O95847 323 aa25.66■■□□□ 1.7
TRIM54-201ENST00000296098 UNGP13051 313 aaPredicted RBP25.66■■□□□ 1.7
TRIM54-201ENST00000296098 LY6KQ17RY6 165 aa25.66■■□□□ 1.7
TRIM54-201ENST00000296098 SPOPLQ6IQ16 392 aa25.66■■□□□ 1.7
TRIM54-201ENST00000296098 LRIG3Q6UXM1 1119 aa25.66■■□□□ 1.7
TRIM54-201ENST00000296098 CLMNQ96JQ2 1002 aa25.66■■□□□ 1.7
TRIM54-201ENST00000296098 CWC15Q9P013 229 aaKnown RBP25.66■■□□□ 1.7
TRIM54-201ENST00000296098 IVLP07476 585 aa25.66■■□□□ 1.7
TRIM54-201ENST00000296098 MTMR3Q13615 1198 aa25.66■■□□□ 1.7
TRIM54-201ENST00000296098 TRIM11Q96F44 468 aa25.66■■□□□ 1.7
TRIM54-201ENST00000296098 RASAL2Q9UJF2 1139 aa25.66■■□□□ 1.7
TRIM54-201ENST00000296098 PCDHA3Q9Y5H8 950 aa25.66■■□□□ 1.7
TRIM54-201ENST00000296098 CXCL11O14625 94 aa25.65■■□□□ 1.7
TRIM54-201ENST00000296098 CHRNA3P32297 505 aa25.65■■□□□ 1.7
TRIM54-201ENST00000296098 CUL2Q13617 745 aa25.65■■□□□ 1.7
TRIM54-201ENST00000296098 CPNE8Q86YQ8 564 aa25.65■■□□□ 1.7
TRIM54-201ENST00000296098 ATP8B4Q8TF62 1192 aa25.65■■□□□ 1.7
TRIM54-201ENST00000296098 AVENQ9NQS1 362 aaPredicted RBP25.65■■□□□ 1.7
TRIM54-201ENST00000296098 AGTPBP1Q9UPW5 1226 aa25.65■■□□□ 1.7
TRIM54-201ENST00000296098 CNTNAP2Q9UHC6 1331 aa25.65■■□□□ 1.7
TRIM54-201ENST00000296098 MYBL1P10243 752 aa25.64■■□□□ 1.7
TRIM54-201ENST00000296098 HARSP12081 509 aaKnown RBP25.64■■□□□ 1.7
TRIM54-201ENST00000296098 DRP2Q13474 957 aa25.64■■□□□ 1.7
TRIM54-201ENST00000296098 UAP1Q16222 522 aaPredicted RBP25.64■■□□□ 1.7
TRIM54-201ENST00000296098 KCTD19Q17RG1 926 aaPredicted RBP25.64■■□□□ 1.7
TRIM54-201ENST00000296098 LRRC31Q6UY01 552 aa25.64■■□□□ 1.7
TRIM54-201ENST00000296098 ZPBP2Q6X784 338 aa25.64■■□□□ 1.7
TRIM54-201ENST00000296098 JAMLQ86YT9 394 aa25.64■■□□□ 1.7
TRIM54-201ENST00000296098 ANKRD13AQ8IZ07 590 aa25.64■■□□□ 1.7
TRIM54-201ENST00000296098 MCOLN2Q8IZK6 566 aa25.64■■□□□ 1.7
TRIM54-201ENST00000296098 ERP44Q9BS26 406 aa25.64■■□□□ 1.7
TRIM54-201ENST00000296098 TRIM31Q9BZY9 425 aa25.64■■□□□ 1.7
TRIM54-201ENST00000296098 APOBEC3GQ9HC16 384 aaKnown RBP25.64■■□□□ 1.7
TRIM54-201ENST00000296098 SPDYE5A6NIY4 337 aa25.64■■□□□ 1.69
TRIM54-201ENST00000296098 PYGMP11217 842 aa25.64■■□□□ 1.69
TRIM54-201ENST00000296098 ACO1P21399 889 aaKnown RBP25.64■■□□□ 1.69
TRIM54-201ENST00000296098 EFNA5P52803 228 aa25.64■■□□□ 1.69
TRIM54-201ENST00000296098 DUPD1Q68J44 220 aa25.64■■□□□ 1.69
TRIM54-201ENST00000296098 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.64■■□□□ 1.69
TRIM54-201ENST00000296098 TMC3Q7Z5M5 1100 aa25.64■■□□□ 1.69
TRIM54-201ENST00000296098 PRELID2Q8N945 189 aa25.64■■□□□ 1.69
TRIM54-201ENST00000296098 C1orf131Q8NDD1 294 aaKnown RBP25.64■■□□□ 1.69
TRIM54-201ENST00000296098 PRPF31Q8WWY3 499 aaKnown RBP25.64■■□□□ 1.69
TRIM54-201ENST00000296098 R3HDMLQ9H3Y0 253 aa25.64■■□□□ 1.69
TRIM54-201ENST00000296098 ANAPC7Q9UJX3 599 aa25.64■■□□□ 1.69
TRIM54-201ENST00000296098 ARIH2O95376 493 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 FLT3P36888 993 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 RWDD2BP57060 319 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 SH2D3CQ8N5H7 860 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 BBXQ8WY36 941 aaPredicted RBP25.63■■□□□ 1.69
TRIM54-201ENST00000296098 GLG1Q92896 1179 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 C18orf8Q96DM3 657 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 CAPS2Q9BXY5 557 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 PGK2P07205 417 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 CLTAP09496 248 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 TBXAS1P24557 533 aaPredicted RBP25.63■■□□□ 1.69
TRIM54-201ENST00000296098 MAPK4P31152 587 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 NSFP46459 744 aaKnown RBP25.63■■□□□ 1.69
TRIM54-201ENST00000296098 NOP14P78316 857 aaKnown RBP25.63■■□□□ 1.69
TRIM54-201ENST00000296098 CENPCQ03188 943 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 CEP85LQ5SZL2 805 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 KCTD16Q68DU8 428 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 KCNV1Q6PIU1 500 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 FGD4Q96M96 766 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 GPR20Q99678 358 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 MRPL4Q9BYD3 311 aaKnown RBP25.63■■□□□ 1.69
TRIM54-201ENST00000296098 RNF181Q9P0P0 153 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 PCDHB4Q9Y5E5 795 aa25.63■■□□□ 1.69
TRIM54-201ENST00000296098 GOLGA6L10A6NI86 522 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 CLDN3O15551 220 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 CYP1A1P04798 512 aaPredicted RBP25.62■■□□□ 1.69
TRIM54-201ENST00000296098 MARK3P27448 753 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 SKOR1P84550 965 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 IER5Q5VY09 327 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 SLC13A5Q86YT5 568 aaPredicted RBP25.62■■□□□ 1.69
TRIM54-201ENST00000296098 BRSK2Q8IWQ3 736 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 OR5B17Q8NGF7 314 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 UBLCP1Q8WVY7 318 aaPredicted RBP25.62■■□□□ 1.69
TRIM54-201ENST00000296098 TCP11Q8WWU5 503 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 CPA5Q8WXQ8 436 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 MAGOHBQ96A72 148 aaKnown RBP25.62■■□□□ 1.69
TRIM54-201ENST00000296098 FMO2Q99518 471 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 CCDC113Q9H0I3 377 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 PCYOX1Q9UHG3 505 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 MTUS1Q9ULD2 1270 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 KCNH4Q9UQ05 1017 aa25.62■■□□□ 1.69
TRIM54-201ENST00000296098 NOP56O00567 594 aaKnown RBP25.61■■□□□ 1.69
TRIM54-201ENST00000296098 SOCS7O14512 581 aa25.61■■□□□ 1.69
TRIM54-201ENST00000296098 GAS2O43903 313 aaKnown RBP25.61■■□□□ 1.69
TRIM54-201ENST00000296098 NF2P35240 595 aa25.61■■□□□ 1.69
TRIM54-201ENST00000296098 SEZ6Q53EL9 994 aa25.61■■□□□ 1.69
TRIM54-201ENST00000296098 CDCA2Q69YH5 1023 aaPredicted RBP25.61■■□□□ 1.69
TRIM54-201ENST00000296098 TRIM72Q6ZMU5 477 aa25.61■■□□□ 1.69
TRIM54-201ENST00000296098 EFCAB13Q8IY85 973 aa25.61■■□□□ 1.69
TRIM54-201ENST00000296098 ATP6V1G3Q96LB4 118 aa25.61■■□□□ 1.69
TRIM54-201ENST00000296098 TXNRD2Q9NNW7 524 aa25.61■■□□□ 1.69
TRIM54-201ENST00000296098 H0YGN5 161 aa25.61■■□□□ 1.69
TRIM54-201ENST00000296098 LGR5O75473 907 aa25.61■■□□□ 1.69
TRIM54-201ENST00000296098 PTGIRP43119 386 aa25.61■■□□□ 1.69
TRIM54-201ENST00000296098 PPIL2Q13356 520 aa25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms