RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 PCNX4Q63HM2 1172 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 MCPH1Q8NEM0 835 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 ATP2A3Q93084 1043 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 ACCSQ96QU6 501 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 CYTH2Q99418 400 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 DUSP9Q99956 384 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 RGL1Q9NZL6 768 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 ANAPC7Q9UJX3 599 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 RGPD3A6NKT7 1758 aaPredicted RBP12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 RGPD4Q7Z3J3 1758 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 NPHP3-ACAD11A0A0J9YXS1 232 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 VWA5AO00534 786 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 PHF2O75151 1096 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 HAUS5O94927 633 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 BPIFB4P59827 614 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 RNF168Q8IYW5 571 aaPredicted RBP12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 TPCN2Q8NHX9 752 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 TRPM4Q8TD43 1214 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 KLRG1Q96E93 195 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 DDX27Q96GQ7 796 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 GDF3Q9NR23 364 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 PCDHA10Q9Y5I2 948 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 TRAPPC3O43617 180 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 PSMC4P43686 418 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 ERVK-9P63128 1117 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 ZNF844Q08AG5 666 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 TRMT10CQ7L0Y3 403 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 AGGF1Q8N302 714 aaeCLIP12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 C1orf54Q8WWF1 131 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 ERP27Q96DN0 273 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 STAMBPL1Q96FJ0 436 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 FAM167AQ96KS9 214 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 CENPKQ9BS16 269 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 HEMGNQ9BXL5 484 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 WNT8AQ9H1J5 351 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 CNTNAP1P78357 1384 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 M0R2N6 131 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 SLURP2P0DP57 97 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 GHRP10912 638 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 CENPUQ71F23 418 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 ST13P4Q8IZP2 240 aaPredicted RBP12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 ACTRT1Q8TDG2 376 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 PPP4R1Q8TF05 950 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 MIEF2Q96C03 454 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 CEP170P1Q96L14 293 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 LXNQ9BS40 222 aa12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 CNOT8Q9UFF9 292 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 ZC3H4Q9UPT8 1303 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-201ENST00000266546 CDH16O75309 829 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 PTGER2P43116 358 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 CLK2P49760 499 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 EDRF1Q3B7T1 1238 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 CASC4Q6P4E1 433 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 LONP2Q86WA8 852 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 SMC1BQ8NDV3 1235 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 ZNF564Q8TBZ8 553 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 ZNF507Q8TCN5 953 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 SYTL5Q8TDW5 730 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 FGD4Q96M96 766 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 UBXN6Q9BZV1 441 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 KIF9Q9HAQ2 790 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 KCNMB3Q9NPA1 279 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 BCAP29Q9UHQ4 241 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 A0A1B0GUL6 1792 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 SHOX2O60902 331 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 CETPP11597 493 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 RFX1P22670 979 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 MRPS35P82673 323 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 TRPC3Q13507 836 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 TMEM119Q4V9L6 283 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 NOL9Q5SY16 702 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 PADI6Q6TGC4 694 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 ZNF662Q6ZS27 426 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 TEX9Q8N6V9 391 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 SLC7A3Q8WY07 619 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 MAML1Q92585 1016 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 CARD9Q9H257 536 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 ASB14A6NK59 587 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 WNT7AO00755 349 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 PDXKO00764 312 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 CASQ2O14958 399 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 SPAG7O75391 227 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 UBOX5O94941 541 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 POLGP54098 1239 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 KRT17Q04695 432 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 DYNC1I2Q13409 638 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 PSMD6Q15008 389 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 TRIM42Q8IWZ5 723 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 DEPTORQ8TB45 409 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 SNF8Q96H20 258 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 ZBED3Q96IU2 234 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 ROPN1BQ9BZX4 212 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 ROPN1Q9HAT0 212 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 GGA2Q9UJY4 613 aa12.24□□□□□ -0.45
CLSTN3-201ENST00000266546 CFAP69A5D8W1 941 aa12.23□□□□□ -0.45
CLSTN3-201ENST00000266546 ZWINTO95229 277 aa12.23□□□□□ -0.45
CLSTN3-201ENST00000266546 TRIM49P0CI25 452 aa12.23□□□□□ -0.45
CLSTN3-201ENST00000266546 TRIM49CP0CI26 452 aa12.23□□□□□ -0.45
CLSTN3-201ENST00000266546 CCDC14Q49A88 953 aa12.23□□□□□ -0.45
CLSTN3-201ENST00000266546 DPP9Q86TI2 863 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms