RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 COPB2P35606 906 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 SERPINB4P48594 390 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 SNRPFP62306 86 aaKnown RBP11.35□□□□□ -0.59
CD44-201ENST00000263398 TSPY1Q01534 308 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 POU5F1BQ06416 359 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 P3H1Q32P28 736 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 C1orf228Q6PIY5 440 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 OR2W6PQ8NHA6 318 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 SPATA33Q96N06 139 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 COL3A1P02461 1466 aaPredicted RBP11.35□□□□□ -0.59
CD44-201ENST00000263398 FAM47DPA6NHR8 397 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 APOL1O14791 398 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 PRKCBP05771 671 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 H2AFXP16104 143 aaPredicted RBP11.35□□□□□ -0.59
CD44-201ENST00000263398 ACOT2P49753 483 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 ERVK-24P63145 666 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 AP1B1Q10567 949 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 NCOA4Q13772 614 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 PIGHQ14442 188 aaPredicted RBP11.35□□□□□ -0.59
CD44-201ENST00000263398 STILQ15468 1287 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 ZC2HC1CQ53FD0 456 aaPredicted RBP11.35□□□□□ -0.59
CD44-201ENST00000263398 CDC42EP5Q6NZY7 148 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 KCNV1Q6PIU1 500 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 RGS9BPQ6ZS82 235 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 SCN4BQ8IWT1 228 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 CPA5Q8WXQ8 436 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 TEX13BQ9BXU2 312 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 FUT8Q9BYC5 575 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 TMEM117Q9H0C3 514 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 ATF5Q9Y2D1 282 aaPredicted RBP11.35□□□□□ -0.59
CD44-201ENST00000263398 NEU2Q9Y3R4 380 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 FAM107AO95990 144 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 ELF1P32519 619 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 LONRF1Q17RB8 773 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 LRRC23Q53EV4 343 aaPredicted RBP11.35□□□□□ -0.59
CD44-201ENST00000263398 DDX42Q86XP3 938 aaKnown RBP eCLIP11.35□□□□□ -0.59
CD44-201ENST00000263398 ANKMY2Q8IV38 441 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 RBBP8NLQ8NC74 664 aaPredicted RBP11.35□□□□□ -0.59
CD44-201ENST00000263398 KIF12Q96FN5 646 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 ZNF560Q96MR9 790 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 FAM167BQ9BTA0 163 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 VCPKMTQ9H867 229 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 TECPR2O15040 1411 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 PPP1R12AO14974 1030 aaPredicted RBP11.35□□□□□ -0.59
CD44-201ENST00000263398 PRLRP16471 622 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 NFKBIAP25963 317 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 INPP1P49441 399 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 BAATQ14032 418 aaPredicted RBP11.35□□□□□ -0.59
CD44-201ENST00000263398 COG2Q14746 738 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 RABGAP1LQ5R372 815 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 NDUFAF2Q8N183 169 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 DACT3Q96B18 629 aaPredicted RBP11.35□□□□□ -0.59
CD44-201ENST00000263398 SEC16BQ96JE7 1060 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 TNIP3Q96KP6 325 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 KIF9Q9HAQ2 790 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 CYP4F11Q9HBI6 524 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 FAM8A1Q9UBU6 413 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 NAGPAQ9UK23 515 aa11.35□□□□□ -0.59
CD44-201ENST00000263398 RNF103-CHMP3A0A140T963 221 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 NR3C2P08235 984 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 PDGFRAP16234 1089 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 PGM1P36871 562 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 SGSM1Q2NKQ1 1148 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 MARCH10Q8NA82 808 aaPredicted RBP11.34□□□□□ -0.59
CD44-201ENST00000263398 AGXT2Q9BYV1 514 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 TMEM8AQ9HCN3 771 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 PSMC3IPQ9P2W1 217 aaPredicted RBP11.34□□□□□ -0.59
CD44-201ENST00000263398 DBR1Q9UK59 544 aaKnown RBP11.34□□□□□ -0.59
CD44-201ENST00000263398 A0A087X0T9 212 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 TRIM66O15016 1216 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 SNX2O60749 519 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 FAM228BP0C875 321 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 CD44P16070 742 aaKnown RBP11.34□□□□□ -0.59
CD44-201ENST00000263398 EEF1DP29692 281 aaKnown RBP11.34□□□□□ -0.59
CD44-201ENST00000263398 AGGF1Q8N302 714 aaeCLIP11.34□□□□□ -0.59
CD44-201ENST00000263398 YIPF3Q9GZM5 350 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 RANBP17Q9H2T7 1088 aaKnown RBP11.34□□□□□ -0.59
CD44-201ENST00000263398 KBTBD4Q9NVX7 518 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 GOLGA8RI6L899 631 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 SMAPO00193 183 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 ADORA2BP29275 332 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 SSTR3P32745 418 aaPredicted RBP11.34□□□□□ -0.59
CD44-201ENST00000263398 TOB1P50616 345 aaPredicted RBP11.34□□□□□ -0.59
CD44-201ENST00000263398 PRAMEP78395 509 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 MXD4Q14582 209 aaPredicted RBP11.34□□□□□ -0.59
CD44-201ENST00000263398 KYNUQ16719 465 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 MTHFD1LQ6UB35 978 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 SLC26A7Q8TE54 656 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 POLR3CQ9BUI4 534 aaPredicted RBP11.34□□□□□ -0.59
CD44-201ENST00000263398 TRPV6Q9H1D0 765 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 DNAJC5Q9H3Z4 198 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 ADA2Q9NZK5 511 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 L1RE1Q9UN81 338 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 PPME1Q9Y570 386 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 KDM6AO15550 1401 aaPredicted RBP11.34□□□□□ -0.59
CD44-201ENST00000263398 MYO5BQ9ULV0 1848 aa11.34□□□□□ -0.59
CD44-201ENST00000263398 APRTP07741 180 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 SEC24CP53992 1094 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 HMGCS2P54868 508 aa11.33□□□□□ -0.6
CD44-201ENST00000263398 EFTUD2Q15029 972 aaKnown RBP eCLIP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms