RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 FITM2Q8N6M3 262 aa13.58□□□□□ -0.24
VAMP4-201ENST00000236192 CDC42EP4Q9H3Q1 356 aaKnown RBP13.58□□□□□ -0.24
VAMP4-201ENST00000236192 LRRC10BA6NIK2 292 aa13.58□□□□□ -0.24
VAMP4-201ENST00000236192 CHMP2AO43633 222 aa13.58□□□□□ -0.24
VAMP4-201ENST00000236192 MSL3P1P0C860 447 aa13.58□□□□□ -0.24
VAMP4-201ENST00000236192 STX1BP61266 288 aa13.58□□□□□ -0.24
VAMP4-201ENST00000236192 GEN1Q17RS7 908 aa13.58□□□□□ -0.24
VAMP4-201ENST00000236192 ZNF618Q5T7W0 954 aa13.58□□□□□ -0.24
VAMP4-201ENST00000236192 SLC35G2Q8TBE7 412 aa13.58□□□□□ -0.24
VAMP4-201ENST00000236192 HPS1Q92902 700 aa13.58□□□□□ -0.24
VAMP4-201ENST00000236192 RBM15Q96T37 977 aaKnown RBP eCLIP13.58□□□□□ -0.24
VAMP4-201ENST00000236192 RBMX2Q9Y388 322 aaKnown RBP13.58□□□□□ -0.24
VAMP4-201ENST00000236192 OVOS2A0A0G2JMS6 1433 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 FCHO2Q0JRZ9 810 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 FLOT2Q14254 428 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 PLS1Q14651 629 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 USP49Q70CQ1 688 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 GET4Q7L5D6 327 aaPredicted RBP13.57□□□□□ -0.24
VAMP4-201ENST00000236192 GUF1Q8N442 669 aaKnown RBP13.57□□□□□ -0.24
VAMP4-201ENST00000236192 GIMAP8Q8ND71 665 aaPredicted RBP13.57□□□□□ -0.24
VAMP4-201ENST00000236192 ATL2Q8NHH9 583 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 C1orf54Q8WWF1 131 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 MMTAG2Q9BU76 263 aaKnown RBP13.57□□□□□ -0.24
VAMP4-201ENST00000236192 TRMT112Q9UI30 125 aaKnown RBP13.57□□□□□ -0.24
VAMP4-201ENST00000236192 PFDN6O15212 129 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 ARHGEF5Q12774 1597 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 PDIA2Q13087 525 aaKnown RBP13.57□□□□□ -0.24
VAMP4-201ENST00000236192 ACVR2BQ13705 512 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 UBE3CQ15386 1083 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 FAAH2Q6GMR7 532 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 SATL1Q86VE3 508 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 C9orf72Q96LT7 481 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 DENND2DQ9H6A0 471 aaPredicted RBP13.57□□□□□ -0.24
VAMP4-201ENST00000236192 ADA2Q9NZK5 511 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 SLC12A6Q9UHW9 1150 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 NOTOA8MTQ0 251 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 GNPATO15228 680 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 MYL2P10916 166 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 RAG1P15918 1043 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 PTENP60484 403 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 BTBD6Q96KE9 485 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 IMPG2Q9BZV3 1241 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 A0A1B0GVG6 124 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 HSPA4LO95757 839 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 PSMC2P35998 433 aaKnown RBP13.57□□□□□ -0.24
VAMP4-201ENST00000236192 COILP38432 576 aaPredicted RBP13.57□□□□□ -0.24
VAMP4-201ENST00000236192 KCNH2Q12809 1159 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 SLC25A41Q8N5S1 370 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 MYCT1Q8N699 235 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 GCNAQ96QF7 691 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 DOLKQ9UPQ8 538 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 EXOC7Q9UPT5 735 aa13.57□□□□□ -0.24
VAMP4-201ENST00000236192 URB2Q14146 1524 aaKnown RBP13.56□□□□□ -0.24
VAMP4-201ENST00000236192 PCDH11YQ9BZA8 1340 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 GSNP06396 782 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 ZNF200P98182 395 aaPredicted RBP13.56□□□□□ -0.24
VAMP4-201ENST00000236192 TUBA3EQ6PEY2 450 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 PODNQ7Z5L7 613 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 REXO1Q8N1G1 1221 aaKnown RBP13.56□□□□□ -0.24
VAMP4-201ENST00000236192 SUPT20HQ8NEM7 779 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 ZNF594Q96JF6 807 aaPredicted RBP13.56□□□□□ -0.24
VAMP4-201ENST00000236192 RAD21L1Q9H4I0 556 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 EMILIN3Q9NT22 766 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 REXO2Q9Y3B8 237 aaKnown RBP13.56□□□□□ -0.24
VAMP4-201ENST00000236192 CPDO75976 1380 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 A6NJR5 290 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 PBX1P40424 430 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 PTK2BQ14289 1009 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 KRT39Q6A163 491 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 AAGABQ6PD74 315 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 TAB3Q8N5C8 712 aaPredicted RBP13.56□□□□□ -0.24
VAMP4-201ENST00000236192 ZNF398Q8TD17 642 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 SCFD1Q8WVM8 642 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 ZSWIM5Q9P217 1185 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 PEX11AO75192 247 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 HOXD12P35452 270 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 MAGEA4P43358 317 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 ITGA8P53708 1063 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 CDR2LQ86X02 465 aaPredicted RBP13.56□□□□□ -0.24
VAMP4-201ENST00000236192 WHRNQ9P202 907 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 FAM237AA0A1B0GTK4 181 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 SMCO2A6NFE2 343 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 VCPP55072 806 aaKnown RBP13.56□□□□□ -0.24
VAMP4-201ENST00000236192 FOLH1Q04609 750 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 RPS6KA2Q15349 733 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 TSPAN14Q8NG11 270 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 YIPF2Q9BWQ6 316 aa13.56□□□□□ -0.24
VAMP4-201ENST00000236192 NKX1-2Q9UD57 310 aaPredicted RBP13.56□□□□□ -0.24
VAMP4-201ENST00000236192 CDK12Q9NYV4 1490 aaPredicted RBP13.56□□□□□ -0.24
VAMP4-201ENST00000236192 IDH3BO43837 385 aa13.55□□□□□ -0.24
VAMP4-201ENST00000236192 PORP16435 677 aaPredicted RBP13.55□□□□□ -0.24
VAMP4-201ENST00000236192 TTKP33981 857 aa13.55□□□□□ -0.24
VAMP4-201ENST00000236192 AUHQ13825 339 aaKnown RBP13.55□□□□□ -0.24
VAMP4-201ENST00000236192 JADE1Q6IE81 842 aa13.55□□□□□ -0.24
VAMP4-201ENST00000236192 DNAJC1Q96KC8 554 aaKnown RBP13.55□□□□□ -0.24
VAMP4-201ENST00000236192 HMG20AQ9NP66 347 aa13.55□□□□□ -0.24
VAMP4-201ENST00000236192 HACD3Q9P035 362 aa13.55□□□□□ -0.24
VAMP4-201ENST00000236192 C15orf38-AP3S2A0A0A6YYH1 394 aa13.55□□□□□ -0.24
VAMP4-201ENST00000236192 GJB6O95452 261 aa13.55□□□□□ -0.24
VAMP4-201ENST00000236192 ADCY7P51828 1080 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms