RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 SMAPO00193 183 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 JAK3P52333 1124 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 OVGP1Q12889 678 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 DCTN2Q13561 401 aaKnown RBP10.99□□□□□ -0.65
VCL-201ENST00000211998 FAM43BQ6ZT52 329 aaPredicted RBP10.99□□□□□ -0.65
VCL-201ENST00000211998 ARMCX2Q7L311 632 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 MRPL1Q9BYD6 325 aaKnown RBP10.99□□□□□ -0.65
VCL-201ENST00000211998 METTL5Q9NRN9 209 aaKnown RBP10.99□□□□□ -0.65
VCL-201ENST00000211998 USP17L8P0C7I0 530 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 TYK2P29597 1187 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 TFAMQ00059 246 aaKnown RBP10.99□□□□□ -0.65
VCL-201ENST00000211998 MAP3K10Q02779 954 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 WLSQ5T9L3 541 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 DEPDC1Q5TB30 811 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 ANKRD40Q6AI12 368 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 SYDE1Q6ZW31 735 aaPredicted RBP10.99□□□□□ -0.65
VCL-201ENST00000211998 MTRQ99707 1265 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 ARHGAP31Q2M1Z3 1444 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 PIK3R2O00459 728 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 ASAP2O43150 1006 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 SLC34A1Q06495 639 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 CDC26Q8NHZ8 85 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 PIGBQ92521 554 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 TRIM63Q969Q1 353 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 PPP2R3CQ969Q6 453 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 MAGEB18Q96M61 343 aa10.99□□□□□ -0.65
VCL-201ENST00000211998 SFI1A8K8P3 1242 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 KPNA4O00629 521 aaPredicted RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 LDHAP00338 332 aaKnown RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 PTPN4P29074 926 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 EPS8L3Q8TE67 593 aaKnown RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 PRCCQ92733 491 aaPredicted RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 VPS39Q96JC1 886 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 LRRC4Q9HBW1 653 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 CPSF3Q9UKF6 684 aaKnown RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 UBE4BO95155 1302 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 SSU72P8A0A1W2PR75 194 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 ASNSP08243 561 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 SMARCA1P28370 1054 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 ALDH5A1P51649 535 aaPredicted RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 EZH2Q15910 746 aaKnown RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 RC3H1Q5TC82 1133 aaKnown RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 OR6B2Q6IFH4 312 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 USP17L2Q6R6M4 530 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 C4orf50Q6ZRC1 276 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 SERPINB12Q96P63 405 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 KLF6Q99612 283 aaPredicted RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 PIH1D3Q9NQM4 214 aaKnown RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 ATAD3AQ9NVI7 634 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 CORO1CQ9ULV4 474 aaPredicted RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 PVALEFA0A1B0GWK0 134 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 F8W8V4 182 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 LSM1O15116 133 aaKnown RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 RPS6KA4O75676 772 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 SASH1O94885 1247 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 PLEKHA8P1O95397 391 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 NR3C1P04150 777 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 CD58P19256 250 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 COPAP53621 1224 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 DMC1Q14565 340 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 P3H1Q32P28 736 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 MTERF2Q49AM1 385 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 TBC1D9BQ66K14 1250 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 TTLL6Q8N841 843 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 MMADHCQ9H3L0 296 aaPredicted RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 FAM8A1Q9UBU6 413 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 SESN1Q9Y6P5 492 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 NCOA3Q9Y6Q9 1424 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 PFASO15067 1338 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 STK36Q9NRP7 1315 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 GOLGA8JA6NMD2 632 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 F8VZ95 297 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 ASNA1O43681 348 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 LZTS3O60299 673 aaPredicted RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 TSC22D2O75157 780 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 GRK2P25098 689 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 C21orf59P57076 290 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 PDXDC2PQ6P474 469 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 ELMSAN1Q6PJG2 1045 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 ERICH1Q86X53 443 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 TERB1Q8NA31 727 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 GIMAP8Q8ND71 665 aaPredicted RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 AGAP11Q8TF27 550 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 STK32AQ8WU08 396 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 DHX38Q92620 1227 aaKnown RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 FAM167AQ96KS9 214 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 PABPC3Q9H361 631 aaKnown RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 FBXO40Q9UH90 709 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 PRR23D1E9PI22 279 aaPredicted RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 LCA5LO95447 670 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 PRR23D2P0DMB1 279 aaPredicted RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 ANXA13P27216 316 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 KCNA1Q09470 495 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 KRR1Q13601 381 aaKnown RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 SMAD1Q15797 465 aaKnown RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 RSBN1Q5VWQ0 802 aaPredicted RBP10.98□□□□□ -0.65
VCL-201ENST00000211998 PPP1R18Q6NYC8 613 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 ANGPTL8Q6UXH0 198 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 HDDC2Q7Z4H3 204 aa10.98□□□□□ -0.65
VCL-201ENST00000211998 SLC35G2Q8TBE7 412 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms