RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 FAM160A2Q8N612 972 aaPredicted RBP18.18■□□□□ 0.5
CLN3-264ENST00000637985 SLC7A14Q8TBB6 771 aa18.18■□□□□ 0.5
CLN3-264ENST00000637985 BICD2Q8TD16 824 aa18.18■□□□□ 0.5
CLN3-264ENST00000637985 PIK3R5Q8WYR1 880 aa18.18■□□□□ 0.5
CLN3-264ENST00000637985 RABGGTAQ92696 567 aa18.18■□□□□ 0.5
CLN3-264ENST00000637985 MCRS1Q96EZ8 462 aa18.18■□□□□ 0.5
CLN3-264ENST00000637985 MRPS23Q9Y3D9 190 aaKnown RBP18.18■□□□□ 0.5
CLN3-264ENST00000637985 SF3B1O75533 1304 aaKnown RBP eCLIP18.18■□□□□ 0.52e-9■■■■■ 80.4
CLN3-264ENST00000637985 ADAM12O43184 909 aa18.17■□□□□ 0.5
CLN3-264ENST00000637985 KCNK5O95279 499 aa18.17■□□□□ 0.5
CLN3-264ENST00000637985 CHRNB1P11230 501 aa18.17■□□□□ 0.5
CLN3-264ENST00000637985 TOB2Q14106 344 aaPredicted RBP18.17■□□□□ 0.5
CLN3-264ENST00000637985 SLC5A9Q2M3M2 681 aa18.17■□□□□ 0.5
CLN3-264ENST00000637985 AXDND1Q5T1B0 1012 aaPredicted RBP18.17■□□□□ 0.5
CLN3-264ENST00000637985 LONP2Q86WA8 852 aa18.17■□□□□ 0.5
CLN3-264ENST00000637985 CCDC148Q8NFR7 591 aa18.17■□□□□ 0.5
CLN3-264ENST00000637985 FAM3CQ92520 227 aa18.17■□□□□ 0.5
CLN3-264ENST00000637985 COL26A1Q96A83 441 aa18.17■□□□□ 0.5
CLN3-264ENST00000637985 CCDC51Q96ER9 411 aa18.17■□□□□ 0.5
CLN3-264ENST00000637985 TTPALQ9BTX7 342 aa18.17■□□□□ 0.5
CLN3-264ENST00000637985 RXFP3Q9NSD7 469 aa18.17■□□□□ 0.5
CLN3-264ENST00000637985 COL4A2P08572 1712 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 SOBPA7XYQ1 873 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 K7ESF4 209 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 TSPAN1O60635 241 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 PAPSS2O95340 614 aaPredicted RBP18.16■□□□□ 0.5
CLN3-264ENST00000637985 FCARP24071 287 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 AXLP30530 894 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 CCT2P78371 535 aaKnown RBP18.16■□□□□ 0.5
CLN3-264ENST00000637985 LAMTOR4Q0VGL1 99 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 HSP90AA2PQ14568 343 aaPredicted RBP18.16■□□□□ 0.5
CLN3-264ENST00000637985 SF3A2Q15428 464 aaKnown RBP18.16■□□□□ 0.5
CLN3-264ENST00000637985 PSMD5Q16401 504 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 PLA2G4FQ68DD2 849 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 NOTUMQ6P988 496 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 RTL10Q7L3V2 364 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 SPEM1Q8N4L4 309 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 PSPC1Q8WXF1 523 aaKnown RBP18.16■□□□□ 0.5
CLN3-264ENST00000637985 SLC7A3Q8WY07 619 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 TMEM143Q96AN5 459 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 ZNF274Q96GC6 653 aaPredicted RBP18.16■□□□□ 0.5
CLN3-264ENST00000637985 LSM14BQ9BX40 385 aaKnown RBP18.16■□□□□ 0.5
CLN3-264ENST00000637985 SLC26A6Q9BXS9 759 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 BRD9Q9H8M2 597 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 TRPV5Q9NQA5 729 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 AVENQ9NQS1 362 aaPredicted RBP18.16■□□□□ 0.5
CLN3-264ENST00000637985 WDFY3Q8IZQ1 3526 aa18.16■□□□□ 0.5
CLN3-264ENST00000637985 ERLIN2O94905 339 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 ZNF806P0C7X5 589 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 USP11P51784 963 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 GRIK3Q13003 919 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 RAB33AQ14088 237 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 GRM2Q14416 872 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 PCBP1Q15365 356 aaKnown RBP eCLIP18.15■□□□□ 0.5
CLN3-264ENST00000637985 STPG1Q5TH74 334 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 FAM171A1Q5VUB5 890 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 MAP4K3Q8IVH8 894 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 TRIM22Q8IYM9 498 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 C12orf50Q8NA57 414 aaPredicted RBP18.15■□□□□ 0.5
CLN3-264ENST00000637985 IRF7Q92985 503 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 PAAF1Q9BRP4 392 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 TRMT61BQ9BVS5 477 aaKnown RBP18.15■□□□□ 0.5
CLN3-264ENST00000637985 APOL6Q9BWW8 343 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 CSRNP2Q9H175 543 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 DHX33Q9H6R0 707 aaKnown RBP18.15■□□□□ 0.5
CLN3-264ENST00000637985 SH3GLB2Q9NR46 395 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 CACNG4Q9UBN1 327 aa18.15■□□□□ 0.5
CLN3-264ENST00000637985 LAMA1P25391 3075 aa18.14■□□□□ 0.5
CLN3-264ENST00000637985 RHOP08100 348 aa18.14■□□□□ 0.49
CLN3-264ENST00000637985 NPEPPSP55786 919 aa18.14■□□□□ 0.49
CLN3-264ENST00000637985 PSMC5P62195 406 aa18.14■□□□□ 0.49
CLN3-264ENST00000637985 CEP57Q86XR8 500 aa18.14■□□□□ 0.49
CLN3-264ENST00000637985 ZNF579Q8NAF0 562 aaKnown RBP18.14■□□□□ 0.49
CLN3-264ENST00000637985 RNF149Q8NC42 400 aa18.14■□□□□ 0.49
CLN3-264ENST00000637985 CPB2Q96IY4 423 aa18.14■□□□□ 0.49
CLN3-264ENST00000637985 TMEM121BQ9BXQ6 578 aaPredicted RBP18.14■□□□□ 0.49
CLN3-264ENST00000637985 NXF3Q9H4D5 531 aaKnown RBP18.14■□□□□ 0.49
CLN3-264ENST00000637985 NCOA5Q9HCD5 579 aaKnown RBP18.14■□□□□ 0.49
CLN3-264ENST00000637985 ZNF334Q9HCZ1 680 aaPredicted RBP18.14■□□□□ 0.49
CLN3-264ENST00000637985 PIAS3Q9Y6X2 628 aa18.14■□□□□ 0.49
CLN3-264ENST00000637985 ASAP2O43150 1006 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 CEBPBP17676 345 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 AKAP5P24588 427 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 SSRP1Q08945 709 aaKnown RBP18.13■□□□□ 0.49
CLN3-264ENST00000637985 CPLX2Q6PUV4 134 aaKnown RBP18.13■□□□□ 0.49
CLN3-264ENST00000637985 LRSAM1Q6UWE0 723 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 FERMT3Q86UX7 667 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 EXOC8Q8IYI6 725 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 HACE1Q8IYU2 909 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 HASPINQ8TF76 798 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 LOXL4Q96JB6 756 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 ARRDC1-AS1Q9H2J1 176 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 ZFP14Q9HCL3 533 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 PDRG1Q9NUG6 133 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 VPS54Q9P1Q0 977 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 WASF3Q9UPY6 502 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 VWA8A3KMH1 1905 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 TICRRQ7Z2Z1 1910 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 ZMYM2Q9UBW7 1377 aa18.13■□□□□ 0.49
CLN3-264ENST00000637985 SPAG17Q6Q759 2223 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms