RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ALG13Q9NP73 1137 aaKnown RBP4.27□□□□□ -1.73
SCN1A-208ENST00000625916 KLHL11Q9NVR0 708 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 LRIT1Q9P2V4 623 aa4.27□□□□□ -1.73
SCN1A-208ENST00000625916 CXorf49A8MYA2 514 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-208ENST00000625916 PHF2O75151 1096 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 MATN4O95460 622 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 ELANEP08246 267 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 ADSLP30566 484 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-208ENST00000625916 ADCYAP1R1P41586 468 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 RARRES1P49788 294 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 MRPS35P82673 323 aaKnown RBP4.26□□□□□ -1.73
SCN1A-208ENST00000625916 SCAPQ12770 1279 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 SEPT7Q16181 437 aaKnown RBP4.26□□□□□ -1.73
SCN1A-208ENST00000625916 B3GNTL1Q67FW5 361 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-208ENST00000625916 HOMER1Q86YM7 354 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 PPM1KQ8N3J5 372 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 REPS2Q8NFH8 660 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 SLC5A5Q92911 643 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 NINJ1Q92982 152 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 FUBP3Q96I24 572 aaKnown RBP eCLIP4.26□□□□□ -1.73
SCN1A-208ENST00000625916 SEMA4GQ9NTN9 838 aa4.26□□□□□ -1.73
SCN1A-208ENST00000625916 A0A1B0GTW7 788 aa4.25□□□□□ -1.73
SCN1A-208ENST00000625916 AKR1B10O60218 316 aa4.25□□□□□ -1.73
SCN1A-208ENST00000625916 NHLH1Q02575 133 aa4.25□□□□□ -1.73
SCN1A-208ENST00000625916 UGT8Q16880 541 aa4.25□□□□□ -1.73
SCN1A-208ENST00000625916 RRP12Q5JTH9 1297 aaKnown RBP4.25□□□□□ -1.73
SCN1A-208ENST00000625916 DHX37Q8IY37 1157 aaKnown RBP4.25□□□□□ -1.73
SCN1A-208ENST00000625916 NIM1KQ8IY84 436 aa4.25□□□□□ -1.73
SCN1A-208ENST00000625916 FBXO18Q8NFZ0 1043 aa4.25□□□□□ -1.73
SCN1A-208ENST00000625916 RNPEPQ9H4A4 650 aa4.25□□□□□ -1.73
SCN1A-208ENST00000625916 GALNT9Q9HCQ5 603 aa4.25□□□□□ -1.73
SCN1A-208ENST00000625916 EDARQ9UNE0 448 aa4.25□□□□□ -1.73
SCN1A-208ENST00000625916 MGST3O14880 152 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 RBMXL2O75526 392 aaKnown RBP4.24□□□□□ -1.73
SCN1A-208ENST00000625916 RAP2AP10114 183 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 ABCG1P45844 678 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 CACNA2D1P54289 1103 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 CXADRP78310 365 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 OCA2Q04671 838 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 MST1LQ2TV78 715 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 FOXR2Q6PJQ5 311 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 C16orf86Q6ZW13 317 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 ZNF572Q7Z3I7 529 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-208ENST00000625916 RASSF3Q86WH2 238 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 DRC7Q8IY82 874 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 SRRM1Q8IYB3 904 aaKnown RBP4.24□□□□□ -1.73
SCN1A-208ENST00000625916 TRMT2AQ8IZ69 625 aaKnown RBP4.24□□□□□ -1.73
SCN1A-208ENST00000625916 FAM43AQ8N2R8 423 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 ACTRT2Q8TDY3 377 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 EAF2Q96CJ1 260 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-208ENST00000625916 UHRF1Q96T88 793 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-208ENST00000625916 AIFM2Q9BRQ8 373 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 TARS2Q9BW92 718 aaKnown RBP4.24□□□□□ -1.73
SCN1A-208ENST00000625916 SLC29A3Q9BZD2 475 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 EMC7Q9NPA0 242 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 RNF7Q9UBF6 113 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 DMTF1Q9Y222 760 aa4.24□□□□□ -1.73
SCN1A-208ENST00000625916 ARHGEF17Q96PE2 2063 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-208ENST00000625916 PNPLA7Q6ZV29 1317 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 LRRC3CA6NJW4 275 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 KRTAP29-1A8MX34 341 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-208ENST00000625916 GPANK1O95872 356 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 ITGB6P18564 788 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 FGFR4P22455 802 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 HSD11B2P80365 405 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 CDK17Q00537 523 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 FOXF2Q12947 444 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 TKFCQ3LXA3 575 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 ATP13A4Q4VNC1 1196 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 BHLHA9Q7RTU4 235 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 OR7D4Q8NG98 312 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 RIN2Q8WYP3 895 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-208ENST00000625916 SMG7Q92540 1137 aaKnown RBP4.23□□□□□ -1.73
SCN1A-208ENST00000625916 APPBP2Q92624 585 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 PTCD3Q96EY7 689 aaKnown RBP4.23□□□□□ -1.73
SCN1A-208ENST00000625916 BOD1Q96IK1 185 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 HEPHQ9BQS7 1158 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 MRI1Q9BV20 369 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 KLK15Q9H2R5 256 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 BCO1Q9HAY6 547 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 FOXJ2Q9P0K8 574 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 SLC17A6Q9P2U8 582 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 DPP7Q9UHL4 492 aa4.23□□□□□ -1.73
SCN1A-208ENST00000625916 MTO1Q9Y2Z2 717 aaKnown RBP4.23□□□□□ -1.73
SCN1A-208ENST00000625916 DNAJC9-AS1A6NH13 148 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 POMCP01189 267 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 ALOX15P16050 662 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-208ENST00000625916 ATP5JP18859 108 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 ECHS1P30084 290 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 PER3P56645 1201 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 CCT2P78371 535 aaKnown RBP4.22□□□□□ -1.73
SCN1A-208ENST00000625916 SP140Q13342 867 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 PDCD1Q15116 288 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 AKNAD1Q5T1N1 836 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 AFMIDQ63HM1 303 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 FAM180AQ6UWF9 173 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 MICALCLQ6ZW33 695 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 GPR156Q8NFN8 814 aa4.22□□□□□ -1.73
SCN1A-208ENST00000625916 LEO1Q8WVC0 666 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-208ENST00000625916 SREK1Q8WXA9 508 aaKnown RBP4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms