RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 USP25Q9UHP3 1055 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 PCDHB13Q9Y5F0 798 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 PRUNE2Q8WUY3 3088 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 SMIM28A0A1B0GU29 152 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 KLRC4O43908 158 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 FAM189A1O60320 539 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 ZNF202O95125 648 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 PRR29P0C7W0 189 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 CXCL8P10145 99 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 EHHADHQ08426 723 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 TUSC3Q13454 348 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 FAM26FQ5R3K3 315 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 TMC7Q7Z402 723 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 DDX53Q86TM3 631 aaKnown RBP16.61■□□□□ 0.25
LIG1-219ENST00000600055 RBM23Q86U06 439 aaKnown RBP16.61■□□□□ 0.25
LIG1-219ENST00000600055 VPS52Q8N1B4 723 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 AUTS2Q8WXX7 1259 aa16.61■□□□□ 0.25
LIG1-219ENST00000600055 TOPORSQ9NS56 1045 aaPredicted RBP16.61■□□□□ 0.25
LIG1-219ENST00000600055 ATG2AQ2TAZ0 1938 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 PVALEFA0A1B0GWK0 134 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 CARNS1A5YM72 827 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 GOLGA6L4A6NEF3 574 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 HIDE1A8MVS5 230 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 PER2O15055 1255 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 OGTO15294 1046 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 CLTAP09496 248 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 IGFBP6P24592 240 aaPredicted RBP16.6■□□□□ 0.25
LIG1-219ENST00000600055 ADSSP30520 456 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 HOXD13P35453 343 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 TFF2Q03403 129 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 SOX4Q06945 474 aaPredicted RBP16.6■□□□□ 0.25
LIG1-219ENST00000600055 SPAG1Q07617 926 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 ALCAMQ13740 583 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 KRBA2Q6ZNG9 492 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 TAS1R1Q7RTX1 841 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.6■□□□□ 0.25
LIG1-219ENST00000600055 SYCP3Q8IZU3 236 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 TMEM130Q8N3G9 435 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 ZSWIM2Q8NEG5 633 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 COLEC11Q9BWP8 271 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 ZBP1Q9H171 429 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 GOLGA2P5Q9HBQ8 144 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 SLC39A2Q9NP94 309 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 CNTN3Q9P232 1028 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 EXOC7Q9UPT5 735 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 STYXL1Q9Y6J8 313 aa16.6■□□□□ 0.25
LIG1-219ENST00000600055 LINC01565O15544 149 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 NR1I2O75469 434 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 CXCL14O95715 111 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 KCNE1P15382 129 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 CA8P35219 290 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 NRIP1P48552 1158 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 ACOT2P49753 483 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 HSP90AA2PQ14568 343 aaPredicted RBP16.59■□□□□ 0.25
LIG1-219ENST00000600055 ENOX2Q16206 610 aaKnown RBP16.59■□□□□ 0.25
LIG1-219ENST00000600055 KMT5BQ4FZB7 885 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 SLFN12LQ6IEE8 588 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 EP400NLQ6ZTU2 488 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 EPM2AIP1Q7L775 607 aaPredicted RBP16.59■□□□□ 0.25
LIG1-219ENST00000600055 HASPINQ8TF76 798 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 POMGNT1Q8WZA1 660 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 HLA-CQ95604 372 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 C18orf25Q96B23 403 aaPredicted RBP16.59■□□□□ 0.25
LIG1-219ENST00000600055 TLE6Q9H808 572 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 NGRNQ9NPE2 291 aaKnown RBP16.59■□□□□ 0.25
LIG1-219ENST00000600055 THEGQ9P2T0 379 aa16.59■□□□□ 0.25
LIG1-219ENST00000600055 AGO2Q9UKV8 859 aaKnown RBP16.59■□□□□ 0.25
LIG1-219ENST00000600055 TTC26A0AVF1 554 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 C2orf71A6NGG8 1288 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 LACTBL1A8MY62 500 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 GADD45BO75293 160 aaPredicted RBP16.58■□□□□ 0.24
LIG1-219ENST00000600055 KIF4AO95239 1232 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 EFEMP2O95967 443 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 CTSAP10619 480 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 SNW1Q13573 536 aaKnown RBP16.58■□□□□ 0.24
LIG1-219ENST00000600055 SMC1AQ14683 1233 aaKnown RBP16.58■□□□□ 0.24
LIG1-219ENST00000600055 PDE12Q6L8Q7 609 aaKnown RBP16.58■□□□□ 0.24
LIG1-219ENST00000600055 FMR1NBQ8N0W7 255 aaPredicted RBP16.58■□□□□ 0.24
LIG1-219ENST00000600055 MRPL43Q8N983 215 aaKnown RBP16.58■□□□□ 0.24
LIG1-219ENST00000600055 ENGASEQ8NFI3 743 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 FAM212AQ96EL1 285 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 GPR62Q9BZJ7 368 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 UBE2ZQ9H832 354 aaPredicted RBP16.58■□□□□ 0.24
LIG1-219ENST00000600055 RPF1Q9H9Y2 349 aaKnown RBP16.58■□□□□ 0.24
LIG1-219ENST00000600055 TSHZ2Q9NRE2 1034 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 CLDND1Q9NY35 253 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 CPSF3Q9UKF6 684 aaKnown RBP16.58■□□□□ 0.24
LIG1-219ENST00000600055 ADAM28Q9UKQ2 775 aa16.58■□□□□ 0.24
LIG1-219ENST00000600055 TDRD15B5MCY1 1934 aaKnown RBP16.57■□□□□ 0.24
LIG1-219ENST00000600055 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.57■□□□□ 0.24
LIG1-219ENST00000600055 EIF3DO15371 548 aaKnown RBP eCLIP16.57■□□□□ 0.24
LIG1-219ENST00000600055 TADA2AO75478 443 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 CLCNKBP51801 687 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 RBM10P98175 930 aaKnown RBP16.57■□□□□ 0.24
LIG1-219ENST00000600055 DPYDQ12882 1025 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 COL19A1Q14993 1142 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 POSTNQ15063 836 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 KYAT1Q16773 422 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 DUSP6Q16828 381 aa16.57■□□□□ 0.24
LIG1-219ENST00000600055 FUT10Q6P4F1 479 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms