RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 CACNG4Q9UBN1 327 aa15.91■□□□□ 0.14
VRK3-206ENST00000594090 PCDHB13Q9Y5F0 798 aa15.91■□□□□ 0.14
VRK3-206ENST00000594090 TRIP11Q15643 1979 aa15.91■□□□□ 0.14
VRK3-206ENST00000594090 TISP43B9A030 160 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 ANKRD63C9JTQ0 380 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 F8W810 466 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 OGTO15294 1046 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 MEFVO15553 781 aaPredicted RBP15.9■□□□□ 0.14
VRK3-206ENST00000594090 FAM189A1O60320 539 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 NR1I2O75469 434 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 GTF2F1P35269 517 aaKnown RBP eCLIP15.9■□□□□ 0.14
VRK3-206ENST00000594090 COL19A1Q14993 1142 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 TMC7Q7Z402 723 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 HLA-CQ95604 372 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 PABPC5Q96DU9 382 aaKnown RBP15.9■□□□□ 0.14
VRK3-206ENST00000594090 PPP1R10Q96QC0 940 aaKnown RBP15.9■□□□□ 0.14
VRK3-206ENST00000594090 ACCSQ96QU6 501 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 MSTO1Q9BUK6 570 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 IKZF4Q9H2S9 585 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 NGRNQ9NPE2 291 aaKnown RBP15.9■□□□□ 0.14
VRK3-206ENST00000594090 COG5Q9UP83 839 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 EXOC7Q9UPT5 735 aa15.9■□□□□ 0.14
VRK3-206ENST00000594090 SMIM28A0A1B0GU29 152 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 CLTAP09496 248 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 CXCL8P10145 99 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 KCNE1P15382 129 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 TNFSF9P41273 254 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 EHHADHQ08426 723 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 SMC1AQ14683 1233 aaKnown RBP15.89■□□□□ 0.13
VRK3-206ENST00000594090 KYAT1Q16773 422 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 SLC10A6Q3KNW5 377 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 FAM26FQ5R3K3 315 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 ZBTB41Q5SVQ8 909 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 GLIS3Q8NEA6 775 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 RABGGTAQ92696 567 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 PAAF1Q9BRP4 392 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 COLEC11Q9BWP8 271 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 UBE2ZQ9H832 354 aaPredicted RBP15.89■□□□□ 0.13
VRK3-206ENST00000594090 STK39Q9UEW8 545 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 STYXL1Q9Y6J8 313 aa15.89■□□□□ 0.13
VRK3-206ENST00000594090 PVALEFA0A1B0GWK0 134 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 HIDE1A8MVS5 230 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 NCK2O43639 380 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 PRPF6O94906 941 aaKnown RBP15.88■□□□□ 0.13
VRK3-206ENST00000594090 EFEMP2O95967 443 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 CTSAP10619 480 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 NRIP1P48552 1158 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 TFF2Q03403 129 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 HSP90AA2PQ14568 343 aaPredicted RBP15.88■□□□□ 0.13
VRK3-206ENST00000594090 BMS1Q14692 1282 aaKnown RBP15.88■□□□□ 0.13
VRK3-206ENST00000594090 SLFN12LQ6IEE8 588 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 STXBP4Q6ZWJ1 553 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 RBM23Q86U06 439 aaKnown RBP15.88■□□□□ 0.13
VRK3-206ENST00000594090 RNF168Q8IYW5 571 aaPredicted RBP15.88■□□□□ 0.13
VRK3-206ENST00000594090 SYCP3Q8IZU3 236 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 ATXN2LQ8WWM7 1075 aaKnown RBP15.88■□□□□ 0.13
VRK3-206ENST00000594090 ZMAT2Q96NC0 199 aaKnown RBP15.88■□□□□ 0.13
VRK3-206ENST00000594090 HERC2P3Q9BVR0 1158 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 IGFLR1Q9H665 355 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 TLE6Q9H808 572 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 CLDND1Q9NY35 253 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 CHMP5Q9NZZ3 219 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 ADAM28Q9UKQ2 775 aa15.88■□□□□ 0.13
VRK3-206ENST00000594090 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.87■□□□□ 0.13
VRK3-206ENST00000594090 TTC26A0AVF1 554 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 GOLGA6L4A6NEF3 574 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 PER2O15055 1255 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 EIF3DO15371 548 aaKnown RBP eCLIP15.87■□□□□ 0.13
VRK3-206ENST00000594090 ADSSP30520 456 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 PPP2R3AQ06190 1150 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 ENOX2Q16206 610 aaKnown RBP15.87■□□□□ 0.13
VRK3-206ENST00000594090 DUSP6Q16828 381 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 CTC1Q2NKJ3 1217 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 FUT10Q6P4F1 479 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 EPM2AIP1Q7L775 607 aaPredicted RBP15.87■□□□□ 0.13
VRK3-206ENST00000594090 MRPL43Q8N983 215 aaKnown RBP15.87■□□□□ 0.13
VRK3-206ENST00000594090 AUTS2Q8WXX7 1259 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 POMGNT1Q8WZA1 660 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 TMEM206Q9H813 350 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 PLEKHA5Q9HAU0 1116 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 GOLGA2P5Q9HBQ8 144 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 SLC38A7Q9NVC3 462 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 CPSF3Q9UKF6 684 aaKnown RBP15.87■□□□□ 0.13
VRK3-206ENST00000594090 AGO2Q9UKV8 859 aaKnown RBP15.87■□□□□ 0.13
VRK3-206ENST00000594090 MYO7AQ13402 2215 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 UBE4BO95155 1302 aa15.87■□□□□ 0.13
VRK3-206ENST00000594090 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.86■□□□□ 0.13
VRK3-206ENST00000594090 C2orf71A6NGG8 1288 aa15.86■□□□□ 0.13
VRK3-206ENST00000594090 LINC01565O15544 149 aa15.86■□□□□ 0.13
VRK3-206ENST00000594090 KLRC4O43908 158 aa15.86■□□□□ 0.13
VRK3-206ENST00000594090 ZNF202O95125 648 aa15.86■□□□□ 0.13
VRK3-206ENST00000594090 KIF4AO95239 1232 aa15.86■□□□□ 0.13
VRK3-206ENST00000594090 CXCL14O95715 111 aa15.86■□□□□ 0.13
VRK3-206ENST00000594090 SOD2P04179 222 aa15.86■□□□□ 0.13
VRK3-206ENST00000594090 MYL1P05976 194 aa15.86■□□□□ 0.13
VRK3-206ENST00000594090 KCNA5P22460 613 aa15.86■□□□□ 0.13
VRK3-206ENST00000594090 CA8P35219 290 aa15.86■□□□□ 0.13
VRK3-206ENST00000594090 MRPS5P82675 430 aaKnown RBP15.86■□□□□ 0.13
VRK3-206ENST00000594090 SOX4Q06945 474 aaPredicted RBP15.86■□□□□ 0.13
VRK3-206ENST00000594090 POSTNQ15063 836 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms