RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 ADAM12O43184 909 aa12.96□□□□□ -0.33
CLIP3-204ENST00000590559 PRKCBP05771 671 aa12.96□□□□□ -0.33
CLIP3-204ENST00000590559 HNRNPA1P09651 372 aaKnown RBP eCLIP12.96□□□□□ -0.33
CLIP3-204ENST00000590559 RBM25P49756 843 aaKnown RBP12.96□□□□□ -0.33
CLIP3-204ENST00000590559 PRPF4BQ13523 1007 aaKnown RBP12.96□□□□□ -0.33
CLIP3-204ENST00000590559 MAPK6Q16659 721 aa12.96□□□□□ -0.33
CLIP3-204ENST00000590559 FAM171A1Q5VUB5 890 aa12.96□□□□□ -0.33
CLIP3-204ENST00000590559 NOSTRINQ8IVI9 506 aa12.96□□□□□ -0.33
CLIP3-204ENST00000590559 ZBTB8OSQ8IWT0 167 aa12.96□□□□□ -0.33
CLIP3-204ENST00000590559 GPR152Q8TDT2 470 aa12.96□□□□□ -0.33
CLIP3-204ENST00000590559 HASPINQ8TF76 798 aa12.96□□□□□ -0.33
CLIP3-204ENST00000590559 FGF14Q92915 247 aa12.96□□□□□ -0.33
CLIP3-204ENST00000590559 NKD2Q969F2 451 aaPredicted RBP12.96□□□□□ -0.33
CLIP3-204ENST00000590559 PPP1R10Q96QC0 940 aaKnown RBP12.96□□□□□ -0.33
CLIP3-204ENST00000590559 RPP25Q9BUL9 199 aaKnown RBP12.96□□□□□ -0.33
CLIP3-204ENST00000590559 OR52Z1P0C646 297 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 FGFR3P22607 806 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 FOSBP53539 338 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 STARD6P59095 220 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 ELAVL2Q12926 359 aaKnown RBP12.95□□□□□ -0.34
CLIP3-204ENST00000590559 RAB33AQ14088 237 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 TRIM29Q14134 588 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 PSMD5Q16401 504 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 XKR4Q5GH76 650 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 NT5DC1Q5TFE4 455 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 GET4Q7L5D6 327 aaPredicted RBP12.95□□□□□ -0.34
CLIP3-204ENST00000590559 GRASPQ7Z6J2 395 aaPredicted RBP12.95□□□□□ -0.34
CLIP3-204ENST00000590559 FOXP1Q9H334 677 aaPredicted RBP12.95□□□□□ -0.34
CLIP3-204ENST00000590559 TBC1D17Q9HA65 648 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 PIDD1Q9HB75 910 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 CA14Q9ULX7 337 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 NUMBLQ9Y6R0 609 aa12.95□□□□□ -0.34
CLIP3-204ENST00000590559 MYH11P35749 1972 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 SEC24BO95487 1268 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 GLULP15104 373 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 FSHRP23945 695 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 FXR2P51116 673 aaKnown RBP eCLIP12.94□□□□□ -0.34
CLIP3-204ENST00000590559 EFNA5P52803 228 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 NTHL1P78549 312 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 GUCY1B3Q02153 619 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 UPP1Q16831 310 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 UVSSAQ2YD98 709 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 DCAF4L1Q3SXM0 396 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 PDXDC1Q6P996 788 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 POTEHQ6S545 545 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 PARM1Q6UWI2 310 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 ALKAL1Q6UXT8 129 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 RSPO2Q6UXX9 243 aaPredicted RBP12.94□□□□□ -0.34
CLIP3-204ENST00000590559 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.94□□□□□ -0.34
CLIP3-204ENST00000590559 RTL10Q7L3V2 364 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 C3orf58Q8NDZ4 430 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 FBXO18Q8NFZ0 1043 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 LLPHQ9BRT6 129 aaKnown RBP12.94□□□□□ -0.34
CLIP3-204ENST00000590559 DDX23Q9BUQ8 820 aaKnown RBP12.94□□□□□ -0.34
CLIP3-204ENST00000590559 PTPRHQ9HD43 1115 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 ARHGEF3Q9NR81 526 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 MTRRQ9UBK8 725 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 CDH7Q9ULB5 785 aa12.94□□□□□ -0.34
CLIP3-204ENST00000590559 EP300Q09472 2414 aaPredicted RBP12.94□□□□□ -0.34
CLIP3-204ENST00000590559 COL4A2P08572 1712 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 OTOGLQ3ZCN5 2332 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 ARHGEF35A5YM69 484 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 C8AP07357 584 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 TRAPPC10P48553 1259 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 CLCNKBP51801 687 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 PDIA5Q14554 519 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 PPP2R5AQ15172 486 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 ZNF174Q15697 407 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 DCLRE1AQ6PJP8 1040 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 TAS1R3Q7RTX0 852 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 DAW1Q8N136 415 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 ADSSL1Q8N142 457 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 IGSF22Q8N9C0 903 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 ERMNQ8TAM6 284 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 KIFAP3Q92845 792 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 FGF13Q92913 245 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 ADPGKQ9BRR6 497 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 KIFC3Q9BVG8 833 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 SEMA4AQ9H3S1 761 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 POLD4Q9HCU8 107 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 LIMCH1Q9UPQ0 1083 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 TNFSF13BQ9Y275 285 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 GDAQ9Y2T3 454 aa12.93□□□□□ -0.34
CLIP3-204ENST00000590559 ABLIM1O14639 778 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 CCL16O15467 120 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 TBC1D4O60343 1298 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 U2AF2P26368 475 aaKnown RBP eCLIP12.92□□□□□ -0.34
CLIP3-204ENST00000590559 OR1D2P34982 312 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 TOB1P50616 345 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-204ENST00000590559 GPC5P78333 572 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 FOXK2Q01167 660 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 SOX4Q06945 474 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-204ENST00000590559 SAFBQ15424 915 aaKnown RBP eCLIP12.92□□□□□ -0.34
CLIP3-204ENST00000590559 TTC38Q5R3I4 469 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 PPM1LQ5SGD2 360 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 AXDND1Q5T1B0 1012 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-204ENST00000590559 LIN9Q5TKA1 542 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 ATF7IP2Q5U623 682 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 HAUS3Q68CZ6 603 aa12.92□□□□□ -0.34
CLIP3-204ENST00000590559 CEP57Q86XR8 500 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms