RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 PRDM12Q9H4Q4 367 aa10.42□□□□□ -0.74
CCDC40-214ENST00000575431 CERS4Q9HA82 394 aa10.42□□□□□ -0.74
CCDC40-214ENST00000575431 MIOSQ9NXC5 875 aa10.42□□□□□ -0.74
CCDC40-214ENST00000575431 CNTN3Q9P232 1028 aa10.42□□□□□ -0.74
CCDC40-214ENST00000575431 CPSF3Q9UKF6 684 aaKnown RBP10.42□□□□□ -0.74
CCDC40-214ENST00000575431 MTUS1Q9ULD2 1270 aa10.42□□□□□ -0.74
CCDC40-214ENST00000575431 FAN1Q9Y2M0 1017 aa10.42□□□□□ -0.74
CCDC40-214ENST00000575431 PCDHA5Q9Y5H7 936 aa10.42□□□□□ -0.74
CCDC40-214ENST00000575431 TTC26A0AVF1 554 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 PDXKO00764 312 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 PTGESO14684 152 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 EXTL3O43909 919 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 FAM189A1O60320 539 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 ZC3H11AO75152 810 aaKnown RBP eCLIP10.41□□□□□ -0.74
CCDC40-214ENST00000575431 FGF18O76093 207 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 DDHD2O94830 711 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 IL18RAPO95256 599 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 MBD3O95983 291 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 GALTP07902 379 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 ADSSP30520 456 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 HOXD13P35453 343 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 SURF1Q15526 300 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 SLC10A6Q3KNW5 377 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 COBLL1Q53SF7 1204 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 Q7L0L9 218 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 NT5DC4Q86YG4 428 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 ZNF280BQ86YH2 543 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 SLC39A11Q8N1S5 342 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 GPD1LQ8N335 351 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 TRIML1Q8N9V2 468 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 KLHL23Q8NBE8 558 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 GLIS3Q8NEA6 775 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 PPP1R10Q96QC0 940 aaKnown RBP10.41□□□□□ -0.74
CCDC40-214ENST00000575431 HAPLN2Q9GZV7 340 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 LMBRD1Q9NUN5 540 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 PLAGL2Q9UPG8 496 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 DERAQ9Y315 318 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 KIAA1671Q9BY89 1806 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 CITO14578 2027 aa10.41□□□□□ -0.74
CCDC40-214ENST00000575431 ZNF233A6NK53 670 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 NRP1O14786 923 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 TGFB1I1O43294 461 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 CALUO43852 315 aaPredicted RBP10.4□□□□□ -0.74
CCDC40-214ENST00000575431 FOSL2P15408 326 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 CYP3A5P20815 502 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 PAX3P23760 479 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 RPL13P26373 211 aaKnown RBP10.4□□□□□ -0.74
CCDC40-214ENST00000575431 RPL9P32969 192 aaKnown RBP10.4□□□□□ -0.74
CCDC40-214ENST00000575431 OR1G1P47890 313 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 AFF1P51825 1210 aaKnown RBP10.4□□□□□ -0.74
CCDC40-214ENST00000575431 STIM1Q13586 685 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 DDX53Q86TM3 631 aaKnown RBP10.4□□□□□ -0.74
CCDC40-214ENST00000575431 SLC9A9Q8IVB4 645 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 NELFCDQ8IXH7 590 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 XXYLT1Q8NBI6 393 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 SPPL3Q8TCT6 385 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 PPP2R3CQ969Q6 453 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 MRPL38Q96DV4 380 aaKnown RBP10.4□□□□□ -0.74
CCDC40-214ENST00000575431 IGSF21Q96ID5 467 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 FBXL18Q96ME1 805 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 GUCD1Q96NT3 240 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 CBWD1Q9BRT8 395 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 AGPAT3Q9NRZ7 376 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 DNAJB4Q9UDY4 337 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 UBQLN1Q9UMX0 589 aaKnown RBP10.4□□□□□ -0.74
CCDC40-214ENST00000575431 TRAF3IP3Q9Y228 551 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 STXBP5LQ9Y2K9 1186 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 C2CD2Q9Y426 696 aa10.4□□□□□ -0.74
CCDC40-214ENST00000575431 FSD2A1L4K1 749 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 TISP43B9A030 160 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 TMEM189-UBE2V1I3L0A0 370 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 LPXNO60711 386 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 ITGB1P05556 798 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 CXCL8P10145 99 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 PTMSP20962 102 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 IGFBP4P22692 258 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 TNFSF9P41273 254 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 SLC11A1P49279 550 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 ACOT2P49753 483 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 ELAVL2Q12926 359 aaKnown RBP10.39□□□□□ -0.75
CCDC40-214ENST00000575431 NAB2Q15742 525 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 ZBTB6Q15916 424 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 ENOX2Q16206 610 aaKnown RBP10.39□□□□□ -0.75
CCDC40-214ENST00000575431 NFIL3Q16649 462 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 SEZ6Q53EL9 994 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 TIGD5Q53EQ6 642 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 DCLRE1AQ6PJP8 1040 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 CRELD2Q6UXH1 353 aaPredicted RBP10.39□□□□□ -0.75
CCDC40-214ENST00000575431 SPRED2Q7Z698 418 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 USP37Q86T82 979 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 BRSK2Q8IWQ3 736 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 GPR65Q8IYL9 337 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 POF1BQ8WVV4 589 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 MYLIPQ8WY64 445 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 FAM213AQ9BRX8 229 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 NUP62CLQ9H1M0 184 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 KCTD10Q9H3F6 313 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 CLSTN2Q9H4D0 955 aa10.39□□□□□ -0.75
CCDC40-214ENST00000575431 ALG13Q9NP73 1137 aaKnown RBP10.39□□□□□ -0.75
CCDC40-214ENST00000575431 NGRNQ9NPE2 291 aaKnown RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms