RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 GCOM2Q9BZD3 368 aaPredicted RBP16.26■□□□□ 0.19
CIITA-204ENST00000570546 PDHA1P08559 390 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 FDX1P10109 184 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 BCAR1P56945 870 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 RAD23BP54727 409 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 NUDCD3Q8IVD9 361 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 PIP4K2CQ8TBX8 421 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 TSC22D3Q99576 134 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 CENPKQ9BS16 269 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 SMG5Q9UPR3 1016 aaKnown RBP16.26■□□□□ 0.19
CIITA-204ENST00000570546 CDH16O75309 829 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 CDKL3Q8IVW4 592 aaPredicted RBP16.26■□□□□ 0.19
CIITA-204ENST00000570546 SLC13A1Q9BZW2 595 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 FAM217BQ9NTX9 383 aaPredicted RBP16.26■□□□□ 0.19
CIITA-204ENST00000570546 NAGPAQ9UK23 515 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 KPNA7A9QM74 516 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 PMS1P54277 932 aaKnown RBP16.26■□□□□ 0.19
CIITA-204ENST00000570546 EARS2Q5JPH6 523 aaKnown RBP16.26■□□□□ 0.19
CIITA-204ENST00000570546 ZNF772Q68DY9 489 aaPredicted RBP16.26■□□□□ 0.19
CIITA-204ENST00000570546 ZNF668Q96K58 619 aaPredicted RBP16.26■□□□□ 0.19
CIITA-204ENST00000570546 SLC12A6Q9UHW9 1150 aa16.26■□□□□ 0.19
CIITA-204ENST00000570546 EIF3EP60228 445 aaKnown RBP16.25■□□□□ 0.19
CIITA-204ENST00000570546 HEATR6Q6AI08 1181 aaKnown RBP16.25■□□□□ 0.19
CIITA-204ENST00000570546 KLC3Q6P597 504 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 FAM161BQ96MY7 647 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 FAM167BQ9BTA0 163 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 RUSC1Q9BVN2 902 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 F5H423 210 aaPredicted RBP16.25■□□□□ 0.19
CIITA-204ENST00000570546 CLGNO14967 610 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 P4HA2O15460 535 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 CIITAP33076 1130 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 COPB2P35606 906 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 CDH6P55285 790 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 COPS2P61201 443 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 ROPN1BQ9BZX4 212 aaPredicted RBP16.25■□□□□ 0.19
CIITA-204ENST00000570546 ROPN1Q9HAT0 212 aaPredicted RBP16.25■□□□□ 0.19
CIITA-204ENST00000570546 CNTNAP4Q9C0A0 1308 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 ENTPD3O75355 529 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 DGAT1O75907 488 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 ACOT2P49753 483 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 PLCB4Q15147 1175 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 RWDD4Q6NW29 188 aaKnown RBP16.25■□□□□ 0.19
CIITA-204ENST00000570546 C9orf72Q96LT7 481 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 PACSIN1Q9BY11 444 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 THAP2Q9H0W7 228 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 BAG5Q9UL15 447 aa16.25■□□□□ 0.19
CIITA-204ENST00000570546 MED24O75448 989 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 MKRN4PQ13434 485 aaPredicted RBP16.24■□□□□ 0.19
CIITA-204ENST00000570546 DSTYKQ6XUX3 929 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 RASSF3Q86WH2 238 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 MXRA8Q9BRK3 442 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 ALG13Q9NP73 1137 aaKnown RBP16.24■□□□□ 0.19
CIITA-204ENST00000570546 NEU2Q9Y3R4 380 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 MSH4O15457 936 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 RXRBP28702 533 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 KRT80Q6KB66 452 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 DHX38Q92620 1227 aaKnown RBP16.24■□□□□ 0.19
CIITA-204ENST00000570546 ATP6V1E2Q96A05 226 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 TMEM8AQ9HCN3 771 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 KCND1Q9NSA2 647 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 ARHGAP20Q9P2F6 1191 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 ANGPTL3Q9Y5C1 460 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 AFF2P51816 1311 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 A0A087X0B3 334 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.24■□□□□ 0.19
CIITA-204ENST00000570546 CENPPQ6IPU0 288 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 SLC4A1P02730 911 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 COILP38432 576 aaPredicted RBP16.24■□□□□ 0.19
CIITA-204ENST00000570546 ESRRGP62508 458 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 EZH2Q15910 746 aaKnown RBP16.24■□□□□ 0.19
CIITA-204ENST00000570546 RGS9BPQ6ZS82 235 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 TRPM8Q7Z2W7 1104 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 BEST2Q8NFU1 509 aa16.24■□□□□ 0.19
CIITA-204ENST00000570546 ASAP2O43150 1006 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 TAC1P20366 129 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 EFNA5P52803 228 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 PLA2G4FQ68DD2 849 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 TRIM67Q6ZTA4 783 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 RBBP8NLQ8NC74 664 aaPredicted RBP16.23■□□□□ 0.19
CIITA-204ENST00000570546 HAUS8Q9BT25 410 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 AGPAT3Q9NRZ7 376 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 TOPORSQ9NS56 1045 aaPredicted RBP16.23■□□□□ 0.19
CIITA-204ENST00000570546 PIM2Q9P1W9 311 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 TMEM120BA0PK00 339 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 GOLGA8RI6L899 631 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 APOL1O14791 398 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 CREB3O43889 395 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 ITGA8P53708 1063 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 SNRPFP62306 86 aaKnown RBP16.23■□□□□ 0.19
CIITA-204ENST00000570546 AP2B1P63010 937 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 SATB1Q01826 763 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 SLC29A2Q14542 456 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 ACAD11Q709F0 780 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 RYBPQ8N488 228 aaPredicted RBP16.23■□□□□ 0.19
CIITA-204ENST00000570546 RIT2Q99578 217 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 DRC3Q9H069 523 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 PAMP19021 973 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 KCNJ1P48048 391 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 C4orf50Q6ZRC1 276 aa16.23■□□□□ 0.19
CIITA-204ENST00000570546 BARGINQ6ZT62 677 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms