RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 C18orf25Q96B23 403 aaPredicted RBP10.78□□□□□ -0.68
CLN3-220ENST00000566040 HVCN1Q96D96 273 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 GBP3Q9H0R5 595 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 LMAN2LQ9H0V9 348 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 ZHX3Q9H4I2 956 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 FAM13BQ9NYF5 915 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 CHMP5Q9NZZ3 219 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 CPSF3Q9UKF6 684 aaKnown RBP10.78□□□□□ -0.68
CLN3-220ENST00000566040 LZTS1Q9Y250 596 aa10.78□□□□□ -0.68
CLN3-220ENST00000566040 NCOR1O75376 2440 aa10.77□□□□□ -0.68
CLN3-220ENST00000566040 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.77□□□□□ -0.69
CLN3-220ENST00000566040 SMIM28A0A1B0GU29 152 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 PPEF2O14830 753 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 HNRNPDLO14979 420 aaKnown RBP10.77□□□□□ -0.69
CLN3-220ENST00000566040 TBX10O75333 385 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 NR1I2O75469 434 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 ZNF202O95125 648 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 KIF4AO95239 1232 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 HARSP12081 509 aaKnown RBP10.77□□□□□ -0.69
CLN3-220ENST00000566040 KCNE1P15382 129 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 SYKP43405 635 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 STK4Q13043 487 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 KMT5BQ4FZB7 885 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 HERC4Q5GLZ8 1057 aaPredicted RBP10.77□□□□□ -0.69
CLN3-220ENST00000566040 FAM26FQ5R3K3 315 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 CLEC17AQ6ZS10 378 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 THNSL1Q8IYQ7 743 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 ABI1Q8IZP0 508 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 CXorf38Q8TB03 319 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 SPATA20Q8TB22 786 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 ZNF507Q8TCN5 953 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 AUTS2Q8WXX7 1259 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 RSPH1Q8WYR4 309 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 CBWD1Q9BRT8 395 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 TMEM175Q9BSA9 504 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 GPR62Q9BZJ7 368 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 TRIM6Q9C030 488 aaPredicted RBP10.77□□□□□ -0.69
CLN3-220ENST00000566040 MRPL44Q9H9J2 332 aaKnown RBP10.77□□□□□ -0.69
CLN3-220ENST00000566040 UBN1Q9NPG3 1134 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 RNF216Q9NWF9 866 aaPredicted RBP10.77□□□□□ -0.69
CLN3-220ENST00000566040 SPG21Q9NZD8 308 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 TUBGCP4Q9UGJ1 667 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 PARP2Q9UGN5 583 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 PTPRJQ12913 1337 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 DOCK8Q8NF50 2099 aa10.77□□□□□ -0.69
CLN3-220ENST00000566040 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.76□□□□□ -0.69
CLN3-220ENST00000566040 PVALEFA0A1B0GWK0 134 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 CASTOR2A6NHX0 329 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 H0YCG3 227 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 OGTO15294 1046 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 EIF3DO15371 548 aaKnown RBP eCLIP10.76□□□□□ -0.69
CLN3-220ENST00000566040 GTPBP6O43824 516 aaPredicted RBP10.76□□□□□ -0.69
CLN3-220ENST00000566040 GCNT3O95395 438 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 SCP2P22307 547 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 ANP32AP39687 249 aaKnown RBP10.76□□□□□ -0.69
CLN3-220ENST00000566040 GUCY2FP51841 1108 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 TFF2Q03403 129 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 UBE3AQ05086 875 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 SPAG1Q07617 926 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 STRN3Q13033 797 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 TUSC3Q13454 348 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 TPRNQ4KMQ1 711 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 DDX53Q86TM3 631 aaKnown RBP10.76□□□□□ -0.69
CLN3-220ENST00000566040 CCDC65Q8IXS2 484 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 EFCAB13Q8IY85 973 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 MICALL1Q8N3F8 863 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 URGCPQ8TCY9 931 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 ERCC4Q92889 916 aaPredicted RBP10.76□□□□□ -0.69
CLN3-220ENST00000566040 B3GALT6Q96L58 329 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 ADPGKQ9BRR6 497 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 KCTD10Q9H3F6 313 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 NSUN3Q9H649 340 aaKnown RBP10.76□□□□□ -0.69
CLN3-220ENST00000566040 TLR9Q9NR96 1032 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 PRG3Q9Y2Y8 225 aaPredicted RBP10.76□□□□□ -0.69
CLN3-220ENST00000566040 PCDHB12Q9Y5F1 795 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 OBSL1O75147 1896 aa10.76□□□□□ -0.69
CLN3-220ENST00000566040 C2orf71A6NGG8 1288 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 LACTBL1A8MY62 500 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 TMEM189-UBE2V1I3L0A0 370 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 CLDN3O15551 220 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 NFICP08651 508 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 BMP6P22004 513 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 PPM1AP35813 382 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 ACOT2P49753 483 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 LIG4P49917 911 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 CLCNKBP51801 687 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 FAM160A1Q05DH4 1040 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 NCBP1Q09161 790 aaKnown RBP10.75□□□□□ -0.69
CLN3-220ENST00000566040 PNOCQ13519 176 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 PTPN14Q15678 1187 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 UPP1Q16831 310 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 TIGD5Q53EQ6 642 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 PLPP4Q5VZY2 271 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 PLEKHO2Q8TD55 490 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 PPM1EQ8WY54 764 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 FBXL18Q96ME1 805 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 HERC2P3Q9BVR0 1158 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 SLC39A2Q9NP94 309 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 CHST7Q9NS84 486 aa10.75□□□□□ -0.69
CLN3-220ENST00000566040 CLEC1BQ9P126 229 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms