RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 CD209Q9NNX6 404 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 C3orf70A6NLC5 250 aaPredicted RBP13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 KCNQ4P56696 695 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 MRPS15P82914 257 aaKnown RBP13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 GRIN1Q05586 938 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 PCYOX1LQ8NBM8 494 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 ZNF555Q8NEP9 628 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 MRPL1Q9BYD6 325 aaKnown RBP13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 TRIM9Q9C026 710 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 NDFIP2Q9NV92 336 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 MOSPD1Q9UJG1 213 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 ZNF229Q9UJW7 825 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 PLEKHG2Q9H7P9 1386 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 SUPT3HO75486 399 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 SRGNP10124 158 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 GFAPP14136 432 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 NAA30Q147X3 362 aaPredicted RBP13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 FASTKD5Q7L8L6 764 aaKnown RBP13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 URGCPQ8TCY9 931 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 RBM15Q96T37 977 aaKnown RBP eCLIP13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 RAVER2Q9HCJ3 691 aaKnown RBP13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 MINPP1Q9UNW1 487 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 AURKCQ9UQB9 309 aa13.92□□□□□ -0.18
CSPG4P11-201ENST00000560634 CCND1P24385 295 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 MAP4P27816 1152 aaKnown RBP13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 P3H1Q32P28 736 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 ANKRD40Q6AI12 368 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 SETD3Q86TU7 594 aaPredicted RBP13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 RNF135Q8IUD6 432 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 PSMC3IPQ9P2W1 217 aaPredicted RBP13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 SFMBT1Q9UHJ3 866 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 COPG1Q9Y678 874 aaKnown RBP13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 TMEM94Q12767 1356 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 FAM47DPA6NHR8 397 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 KDM1AO60341 852 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 BTBD8Q5XKL5 378 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 TEX9Q8N6V9 391 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 EPC1Q9H2F5 836 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 MROH7-TTC4A0A0A0MT08 1334 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 MYL3P08590 195 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 FGFR4P22455 802 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 KDSRQ06136 332 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 SH3KBP1Q96B97 665 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 PPP1R2P1Q96PQ5 205 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 TMEM260Q9NX78 707 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 ZNF711Q9Y462 761 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 MAGI3Q5TCQ9 1506 aa13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 ZNF335Q9H4Z2 1342 aaPredicted RBP13.91□□□□□ -0.18
CSPG4P11-201ENST00000560634 A0A1B0GW55 424 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 DUX4L2P0CJ85 424 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 DUX4L3P0CJ86 424 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 DUX4L4P0CJ87 422 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 DUX4L5P0CJ88 424 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 DUX4L6P0CJ89 424 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 DUX4L7P0CJ90 424 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 EPHA10Q5JZY3 1008 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 TAS2R42Q7RTR8 314 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 CDR2LQ86X02 465 aaPredicted RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 PPHLN1Q8NEY8 458 aaKnown RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 XPO6Q96QU8 1125 aaKnown RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 DUX4Q9UBX2 424 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 MAD2L2Q9UI95 211 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 PNPLA7Q6ZV29 1317 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 ADGRL3Q9HAR2 1447 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 OCM2P0CE71 109 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 OCMP0CE72 109 aaPredicted RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 CYTH1Q15438 398 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 DALRD3Q5D0E6 543 aaKnown RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 C16orf89Q6UX73 402 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 ADSSL1Q8N142 457 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 RIBC1Q8N443 379 aaPredicted RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 ITM2BQ9Y287 266 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 MTO1Q9Y2Z2 717 aaKnown RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 HMOX2P30519 316 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 TJAP1Q5JTD0 557 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 KCNV1Q6PIU1 500 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 KIAA2013Q8IYS2 634 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 RAB42Q8N4Z0 105 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 PRMT1Q99873 361 aaKnown RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 DDX50Q9BQ39 737 aaKnown RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 TBC1D23Q9NUY8 699 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 FAM32AQ9Y421 112 aaKnown RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 GSG1L2A8MUP6 293 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 ATP9BO43861 1147 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 TDP2O95551 362 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 RALAP11233 206 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 CHN1P15882 459 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 NME3Q13232 169 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 CCDC85BQ15834 202 aaPredicted RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 ARL8AQ96BM9 186 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 RMDN1Q96DB5 314 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 PGBD4Q96DM1 585 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 CPVLQ9H3G5 476 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 QTRT2Q9H974 415 aaKnown RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 NSMCE4AQ9NXX6 385 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 APEX2Q9UBZ4 518 aa13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 ZC3H7BQ9UGR2 993 aaKnown RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 FBXO2Q9UK22 296 aaPredicted RBP13.9□□□□□ -0.18
CSPG4P11-201ENST00000560634 FAM107AO95990 144 aa13.89□□□□□ -0.19
CSPG4P11-201ENST00000560634 ENO1P06733 434 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms