RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CMASQ8NFW8 434 aaPredicted RBP11.23□□□□□ -0.61
LDLR-214ENST00000560628 LNX1Q8TBB1 728 aaPredicted RBP11.23□□□□□ -0.61
LDLR-214ENST00000560628 ZNF707Q96C28 371 aaPredicted RBP11.23□□□□□ -0.61
LDLR-214ENST00000560628 ZBTB45Q96K62 511 aaPredicted RBP11.23□□□□□ -0.61
LDLR-214ENST00000560628 DRC1Q96MC2 740 aa11.23□□□□□ -0.61
LDLR-214ENST00000560628 CLSTN3Q9BQT9 956 aa11.23□□□□□ -0.61
LDLR-214ENST00000560628 MRPL4Q9BYD3 311 aaKnown RBP11.23□□□□□ -0.61
LDLR-214ENST00000560628 NT5C3AQ9H0P0 336 aa11.23□□□□□ -0.61
LDLR-214ENST00000560628 CDT1Q9H211 546 aa11.23□□□□□ -0.61
LDLR-214ENST00000560628 PLEKHA4Q9H4M7 779 aa11.23□□□□□ -0.61
LDLR-214ENST00000560628 TMEM134Q9H6X4 195 aa11.23□□□□□ -0.61
LDLR-214ENST00000560628 GOLGA2P5Q9HBQ8 144 aa11.23□□□□□ -0.61
LDLR-214ENST00000560628 PTPRHQ9HD43 1115 aa11.23□□□□□ -0.61
LDLR-214ENST00000560628 WDR6Q9NNW5 1121 aaKnown RBP11.23□□□□□ -0.61
LDLR-214ENST00000560628 DPP7Q9UHL4 492 aa11.23□□□□□ -0.61
LDLR-214ENST00000560628 TDRD15B5MCY1 1934 aaKnown RBP11.23□□□□□ -0.61
LDLR-214ENST00000560628 SMIM28A0A1B0GU29 152 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 I3L4J1 428 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 N4BP1O75113 896 aaKnown RBP11.22□□□□□ -0.61
LDLR-214ENST00000560628 B3GAT3O94766 335 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 PLA2G4BP0C869 781 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 HARSP12081 509 aaKnown RBP11.22□□□□□ -0.61
LDLR-214ENST00000560628 GUCY2CP25092 1073 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 GRM5P41594 1212 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 CLCNKBP51801 687 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 YARSP54577 528 aaKnown RBP11.22□□□□□ -0.61
LDLR-214ENST00000560628 CACNB1Q02641 598 aaPredicted RBP11.22□□□□□ -0.61
LDLR-214ENST00000560628 PSMD5Q16401 504 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 ZNF568Q3ZCX4 644 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 DCLRE1AQ6PJP8 1040 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 GPR65Q8IYL9 337 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 SYT2Q8N9I0 419 aaPredicted RBP11.22□□□□□ -0.61
LDLR-214ENST00000560628 ST13P5Q8NFI4 369 aaPredicted RBP11.22□□□□□ -0.61
LDLR-214ENST00000560628 HDAC7Q8WUI4 952 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 RSAD2Q8WXG1 361 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 PIK3R5Q8WYR1 880 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 CDK5RAP3Q96JB5 506 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 TBC1D32Q96NH3 1257 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 PPP1R10Q96QC0 940 aaKnown RBP11.22□□□□□ -0.61
LDLR-214ENST00000560628 MYADMQ96S97 322 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 CCDC94Q9BW85 323 aaPredicted RBP11.22□□□□□ -0.61
LDLR-214ENST00000560628 KCNK12Q9HB15 430 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 ARHGAP28Q9P2N2 729 aa11.22□□□□□ -0.61
LDLR-214ENST00000560628 RBM19Q9Y4C8 960 aaKnown RBP11.22□□□□□ -0.61
LDLR-214ENST00000560628 CLUHO75153 1309 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 PHLPP2Q6ZVD8 1323 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 ZMYND10O75800 440 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 PLS3P13797 630 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 BRCC3P46736 316 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 SLC12A3P55017 1021 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 CREMQ03060 361 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 ELAVL2Q12926 359 aaKnown RBP11.21□□□□□ -0.61
LDLR-214ENST00000560628 TDGQ13569 410 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 DHX8Q14562 1220 aaKnown RBP11.21□□□□□ -0.61
LDLR-214ENST00000560628 SEZ6Q53EL9 994 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 HYIQ5T013 277 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 ARL6IP4Q66PJ3 421 aaKnown RBP11.21□□□□□ -0.61
LDLR-214ENST00000560628 CD300LGQ6UXG3 332 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 ALKAL1Q6UXT8 129 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 CYP26C1Q6V0L0 522 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 ZMAT2Q96NC0 199 aaKnown RBP11.21□□□□□ -0.61
LDLR-214ENST00000560628 ACAP3Q96P50 834 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 PHOX2BQ99453 314 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 NTPCRQ9BSD7 190 aaKnown RBP11.21□□□□□ -0.61
LDLR-214ENST00000560628 PRKD2Q9BZL6 878 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 C17orf75Q9HAS0 396 aa11.21□□□□□ -0.61
LDLR-214ENST00000560628 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.21□□□□□ -0.61
LDLR-214ENST00000560628 ZNF318Q5VUA4 2279 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 ABLIM1O14639 778 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 C1RP00736 705 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 MCF2P10911 925 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 FGFR3P22607 806 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 OR1D2P34982 312 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 MRE11P49959 708 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 SMTNP53814 917 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 PTPN5P54829 565 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 NTHL1P78549 312 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 GRIN1Q05586 938 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 SOX4Q06945 474 aaPredicted RBP11.2□□□□□ -0.62
LDLR-214ENST00000560628 TCF15Q12870 199 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 STRN3Q13033 797 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 UPP1Q16831 310 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 TMEM119Q4V9L6 283 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 ARSHQ5FYA8 562 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 MPZL3Q6UWV2 235 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 RSPO2Q6UXX9 243 aaPredicted RBP11.2□□□□□ -0.62
LDLR-214ENST00000560628 C3orf58Q8NDZ4 430 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 TMEM161BQ8NDZ6 487 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 SPIRE2Q8WWL2 714 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 STAMQ92783 540 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 C18orf25Q96B23 403 aaPredicted RBP11.2□□□□□ -0.62
LDLR-214ENST00000560628 TIPINQ9BVW5 301 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 MFSD1Q9H3U5 465 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 TOPORSQ9NS56 1045 aaPredicted RBP11.2□□□□□ -0.62
LDLR-214ENST00000560628 ZDHHC7Q9NXF8 308 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 ANKFY1Q9P2R3 1169 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 TRIOO75962 3097 aa11.2□□□□□ -0.62
LDLR-214ENST00000560628 ZDBF2Q9HCK1 2354 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 PLXNA3P51805 1871 aa11.19□□□□□ -0.62
LDLR-214ENST00000560628 TMEM189-UBE2V1I3L0A0 370 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms