RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 B4GALT3O60512 393 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 CA8P35219 290 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 ACOT2P49753 483 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 PPP2R3AQ06190 1150 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 SPAG1Q07617 926 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 CCDC85BQ15834 202 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 CLEC17AQ6ZS10 378 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 EPM2AIP1Q7L775 607 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 HS2ST1Q7LGA3 356 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 COLGALT2Q8IYK4 626 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 SLC39A11Q8N1S5 342 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 KIAA0895Q8NCT3 520 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 SPPL3Q8TCT6 385 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 POF1BQ8WVV4 589 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 RABGGTAQ92696 567 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 SAAL1Q96ER3 474 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 SNX27Q96L92 541 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 CBWD1Q9BRT8 395 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 COLEC11Q9BWP8 271 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 PCIF1Q9H4Z3 704 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 RMND1Q9NWS8 449 aa12.48□□□□□ -0.41
CCDC88C-212ENST00000556767 SMIM28A0A1B0GU29 152 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 GOLGA8IPA6NC78 632 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 GOLGA8JA6NMD2 632 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 NRP1O14786 923 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 CLIC2O15247 247 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 RHOBTB3O94955 611 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 KIF20AO95235 890 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 GARTP22102 1010 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 ADSSP30520 456 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 HOXD13P35453 343 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 PLCB3Q01970 1234 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 DSC1Q08554 894 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 TUSC3Q13454 348 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 KCNB1Q14721 858 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 KNOP1Q1ED39 458 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 SLC10A6Q3KNW5 377 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 TMEM173Q86WV6 379 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 MRPL38Q96DV4 380 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 IGSF21Q96ID5 467 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 FAM213AQ9BRX8 229 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 LMAN2LQ9H0V9 348 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 PLEKHA5Q9HAU0 1116 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 SLC38A7Q9NVC3 462 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 CACNG4Q9UBN1 327 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 CPSF3Q9UKF6 684 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 MAPK8IP1Q9UQF2 711 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 STXBP5LQ9Y2K9 1186 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 PCDHA5Q9Y5H7 936 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 MTCH2Q9Y6C9 303 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 STYXL1Q9Y6J8 313 aa12.47□□□□□ -0.41
CCDC88C-212ENST00000556767 CITO14578 2027 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 LACTBL1A8MY62 500 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 LDHAP00338 332 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 DNAJB1P25685 340 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 CYP2J2P51589 502 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 UBE3AQ05086 875 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 SKIV2LQ15477 1246 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 ENOX2Q16206 610 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 CAMK4Q16566 473 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 BMT2Q1RMZ1 405 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 ISM2Q6H9L7 571 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 ALKAL1Q6UXT8 129 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 GPD1LQ8N335 351 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 MAFAQ8NHW3 353 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 KIF12Q96FN5 646 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 GSDMAQ96QA5 445 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 PPP1R10Q96QC0 940 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 ENTPD7Q9NQZ7 604 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 TLR9Q9NR96 1032 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 AGPAT3Q9NRZ7 376 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 LMCD1Q9NZU5 365 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 CNTN3Q9P232 1028 aa12.46□□□□□ -0.41
CCDC88C-212ENST00000556767 TRIP11Q15643 1979 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 PLXNA4Q9HCM2 1894 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 TTC26A0AVF1 554 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 KIAA0391O15091 583 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 MEFVO15553 781 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 TGFB1I1O43294 461 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 EXTL3O43909 919 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 FAM189A1O60320 539 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 TADA2AO75478 443 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 KCNE1P15382 129 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 IRS1P35568 1242 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 SNRPFP62306 86 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 HSP90AA2PQ14568 343 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 BMS1Q14692 1282 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 TIGD5Q53EQ6 642 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 XKR4Q5GH76 650 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 PLPP4Q5VZY2 271 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 TMC7Q7Z402 723 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 CD302Q8IX05 232 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 ELOA2Q8IYF1 753 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 SMYD4Q8IYR2 804 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 VPS52Q8N1B4 723 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 ZSWIM2Q8NEG5 633 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 GOLGA5Q8TBA6 731 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 HASPINQ8TF76 798 aa12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 BCL7CQ8WUZ0 217 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-212ENST00000556767 C18orf25Q96B23 403 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms