RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 CHMLP26374 656 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 GDI1P31150 447 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 CIITAP33076 1130 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 CNR2P34972 360 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 ZNF252P-AS1Q0IIN9 211 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 HSP90AA2PQ14568 343 aaPredicted RBP16.12■□□□□ 0.17
VPS29-209ENST00000551655 FAM78AQ5JUQ0 283 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 APOA5Q6Q788 366 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 VITQ6UXI7 678 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 SRGAP1Q7Z6B7 1085 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 CDR2LQ86X02 465 aaPredicted RBP16.12■□□□□ 0.17
VPS29-209ENST00000551655 TEX2Q8IWB9 1127 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 SPEM1Q8N4L4 309 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 CNNM3Q8NE01 707 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 PIK3R5Q8WYR1 880 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 GATA6Q92908 595 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 TRMT61BQ9BVS5 477 aaKnown RBP16.12■□□□□ 0.17
VPS29-209ENST00000551655 GLT8D2Q9H1C3 349 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 ZNF334Q9HCZ1 680 aaPredicted RBP16.12■□□□□ 0.17
VPS29-209ENST00000551655 CASTOR2A6NHX0 329 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 hCG_1984214I3L0E3 225 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 IGHDP01880 384 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 IGFBP6P24592 240 aaPredicted RBP16.11■□□□□ 0.17
VPS29-209ENST00000551655 OR1D2P34982 312 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 SOX9P48436 509 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 PXNP49023 591 aaPredicted RBP16.11■□□□□ 0.17
VPS29-209ENST00000551655 LAMTOR4Q0VGL1 99 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 PTGDRQ13258 359 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 RTN1Q16799 776 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 MAP4K3Q8IVH8 894 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 REXO1Q8N1G1 1221 aaKnown RBP16.11■□□□□ 0.17
VPS29-209ENST00000551655 ZNF713Q8N859 430 aaPredicted RBP16.11■□□□□ 0.17
VPS29-209ENST00000551655 ZCCHC14Q8WYQ9 949 aaKnown RBP16.11■□□□□ 0.17
VPS29-209ENST00000551655 CCDC136Q96JN2 1154 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 RIT2Q99578 217 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 GDE1Q9NZC3 331 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 BRPF3Q9ULD4 1205 aa16.11■□□□□ 0.17
VPS29-209ENST00000551655 SMG1Q96Q15 3661 aaKnown RBP16.11■□□□□ 0.17
VPS29-209ENST00000551655 PSMD10O75832 226 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 ERLIN2O94905 339 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 EPN2O95208 641 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 POU2F2P09086 479 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 VIPR2P41587 438 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 RNF43Q68DV7 783 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 KBTBD6Q86V97 674 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 SGMS1Q86VZ5 419 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 RNF149Q8NC42 400 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 RUFY2Q8WXA3 655 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 TCEANC2Q96MN5 208 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 ZSWIM3Q96MP5 696 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 CXCL16Q9H2A7 254 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 ZFP14Q9HCL3 533 aa16.1■□□□□ 0.17
VPS29-209ENST00000551655 RBM28Q9NW13 759 aaKnown RBP16.1■□□□□ 0.17
VPS29-209ENST00000551655 FLNBO75369 2602 aaKnown RBP16.1■□□□□ 0.17
VPS29-209ENST00000551655 EML5Q05BV3 1969 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 TAF4O00268 1085 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 SGSM2O43147 1006 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 CDC27P30260 824 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 CCR2P41597 374 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 GRIK3Q13003 919 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 PRSS36Q5K4E3 855 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 PLA2G2CQ5R387 149 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 PSPC1Q8WXF1 523 aaKnown RBP16.09■□□□□ 0.17
VPS29-209ENST00000551655 IRF7Q92985 503 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 SCNM1Q9BWG6 230 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 CSRNP2Q9H175 543 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 GIT1Q9Y2X7 761 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 FREM2Q5SZK8 3169 aa16.09■□□□□ 0.17
VPS29-209ENST00000551655 LAMA5O15230 3695 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 SLC38A8A6NNN8 435 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 B4GALT5O43286 388 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 PAPSS2O95340 614 aaPredicted RBP16.08■□□□□ 0.16
VPS29-209ENST00000551655 NPTXRO95502 500 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 RAP1GAPP47736 663 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 RAB33AQ14088 237 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 PFKFB3Q16875 520 aaPredicted RBP16.08■□□□□ 0.16
VPS29-209ENST00000551655 TTC22Q5TAA0 569 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 KIAA1211LQ6NV74 962 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 NOTUMQ6P988 496 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 TXNDC11Q6PKC3 985 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 B3GNT9Q6UX72 402 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 SYNE3Q6ZMZ3 975 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 WDR5BQ86VZ2 330 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 ASB16Q96NS5 453 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 CORO1BQ9BR76 489 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 ZMYND12Q9H0C1 365 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 WRAP73Q9P2S5 460 aaPredicted RBP16.08■□□□□ 0.16
VPS29-209ENST00000551655 PARP2Q9UGN5 583 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 CDY1Q9Y6F8 540 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 ASH1LQ9NR48 2969 aaKnown RBP16.08■□□□□ 0.16
VPS29-209ENST00000551655 ARID2Q68CP9 1835 aa16.08■□□□□ 0.16
VPS29-209ENST00000551655 TMEM8BA6NDV4 472 aa16.07■□□□□ 0.16
VPS29-209ENST00000551655 C4orf47A7E2U8 309 aa16.07■□□□□ 0.16
VPS29-209ENST00000551655 SLC27A2O14975 620 aa16.07■□□□□ 0.16
VPS29-209ENST00000551655 GJA1P17302 382 aa16.07■□□□□ 0.16
VPS29-209ENST00000551655 MPLP40238 635 aa16.07■□□□□ 0.16
VPS29-209ENST00000551655 UVSSAQ2YD98 709 aa16.07■□□□□ 0.16
VPS29-209ENST00000551655 TTC8Q8TAM2 541 aa16.07■□□□□ 0.16
VPS29-209ENST00000551655 SLC7A3Q8WY07 619 aa16.07■□□□□ 0.16
VPS29-209ENST00000551655 CEP170P1Q96L14 293 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms