RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 PRMT7Q9NVM4 692 aaPredicted RBP9.36□□□□□ -0.91
USP28-215ENST00000545608 SNTG2Q9NY99 539 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 LIMCH1Q9UPQ0 1083 aa9.36□□□□□ -0.91
USP28-215ENST00000545608 CASTOR2A6NHX0 329 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 PTGESO14684 152 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 SPTLC1O15269 473 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 TGM5O43548 720 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 TADA2AO75478 443 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 OR52Z1P0C646 297 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 HOXB1P14653 301 aaPredicted RBP9.35□□□□□ -0.91
USP28-215ENST00000545608 NPR3P17342 541 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 LIG1P18858 919 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 TUSC3Q13454 348 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 TDGQ13569 410 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 USP41Q3LFD5 358 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 RTP2Q5QGT7 225 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 TTC38Q5R3I4 469 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 ERICH6BQ5W0A0 696 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 EEF1DP3Q658K8 133 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 PRSS55Q6UWB4 352 aaPredicted RBP9.35□□□□□ -0.91
USP28-215ENST00000545608 NOSTRINQ8IVI9 506 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 ZBTB8OSQ8IWT0 167 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 GPR65Q8IYL9 337 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 C4orf32Q8N8J7 132 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 RSAD2Q8WXG1 361 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 SMG7Q92540 1137 aaKnown RBP9.35□□□□□ -0.91
USP28-215ENST00000545608 PRIMPOLQ96LW4 560 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 MYADMQ96S97 322 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 LLPHQ9BRT6 129 aaKnown RBP9.35□□□□□ -0.91
USP28-215ENST00000545608 RHOBTB2Q9BYZ6 727 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 CCDC113Q9H0I3 377 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 NT5C3AQ9H0P0 336 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 FOXP1Q9H334 677 aaPredicted RBP9.35□□□□□ -0.91
USP28-215ENST00000545608 PDZD7Q9H5P4 517 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 TMEM134Q9H6X4 195 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 FNIP2Q9P278 1114 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 ADAM28Q9UKQ2 775 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 CACNA1HO95180 2353 aa9.35□□□□□ -0.91
USP28-215ENST00000545608 ARHGEF35A5YM69 484 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 ACKR2O00590 384 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 N4BP3O15049 544 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 PI15O43692 258 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 NARSO43776 548 aaKnown RBP9.34□□□□□ -0.91
USP28-215ENST00000545608 RECQL4O94761 1208 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 PAPLNO95428 1278 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 C1RP00736 705 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 PRKCBP05771 671 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 IGFBP6P24592 240 aaPredicted RBP9.34□□□□□ -0.91
USP28-215ENST00000545608 GBP2P32456 591 aaPredicted RBP9.34□□□□□ -0.91
USP28-215ENST00000545608 CLCN5P51795 746 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 ORC2Q13416 577 aaPredicted RBP9.34□□□□□ -0.91
USP28-215ENST00000545608 PRPF4BQ13523 1007 aaKnown RBP9.34□□□□□ -0.91
USP28-215ENST00000545608 HSP90AA2PQ14568 343 aaPredicted RBP9.34□□□□□ -0.91
USP28-215ENST00000545608 NAB2Q15742 525 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 MAPK6Q16659 721 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 CWF19L1Q69YN2 538 aaKnown RBP9.34□□□□□ -0.91
USP28-215ENST00000545608 CYP26C1Q6V0L0 522 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 FLCNQ8NFG4 579 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 FBXO18Q8NFZ0 1043 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 ERMNQ8TAM6 284 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 HASPINQ8TF76 798 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 HDAC7Q8WUI4 952 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 KIFC3Q9BVG8 833 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 IRF2BPLQ9H1B7 796 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 C2orf40Q9H1Z8 148 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 MFSD1Q9H3U5 465 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 PLEKHA4Q9H4M7 779 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.34□□□□□ -0.91
USP28-215ENST00000545608 IGSF9Q9P2J2 1179 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 DPP7Q9UHL4 492 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 DUSP12Q9UNI6 340 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 ZMYM2Q9UBW7 1377 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 KMT2EQ8IZD2 1858 aa9.34□□□□□ -0.91
USP28-215ENST00000545608 CLUHO75153 1309 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 ARID2Q68CP9 1835 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 ADAM12O43184 909 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 GFRA3O60609 400 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 EIF5BO60841 1220 aaKnown RBP9.33□□□□□ -0.92
USP28-215ENST00000545608 KIF4AO95239 1232 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 THP07101 528 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 MUTP22033 750 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 CCT6AP40227 531 aaKnown RBP9.33□□□□□ -0.92
USP28-215ENST00000545608 NAMPTP43490 491 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 RBM25P49756 843 aaKnown RBP9.33□□□□□ -0.92
USP28-215ENST00000545608 TOB1P50616 345 aaPredicted RBP9.33□□□□□ -0.92
USP28-215ENST00000545608 NT5DC1Q5TFE4 455 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 FAM171A1Q5VUB5 890 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 ELMSAN1Q6PJG2 1045 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 CEP57Q86XR8 500 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 SLC44A3Q8N4M1 653 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 RDH13Q8NBN7 331 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 ST13P5Q8NFI4 369 aaPredicted RBP9.33□□□□□ -0.92
USP28-215ENST00000545608 DEPTORQ8TB45 409 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 LNX1Q8TBB1 728 aaPredicted RBP9.33□□□□□ -0.92
USP28-215ENST00000545608 STAMQ92783 540 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 KIF2CQ99661 725 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 CLSTN3Q9BQT9 956 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 ADPGKQ9BRR6 497 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 TTPALQ9BTX7 342 aa9.33□□□□□ -0.92
USP28-215ENST00000545608 PRKD2Q9BZL6 878 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 137.7 ms