RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 DDX42Q86XP3 938 aaKnown RBP eCLIP6.16□□□□□ -1.42
VPS50-220ENST00000544910 MAP7D3Q8IWC1 876 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 SLC30A5Q8TAD4 765 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 GPRASP2Q96D09 838 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 FAM129AQ9BZQ8 928 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 INO80BQ9C086 356 aaPredicted RBP6.16□□□□□ -1.42
VPS50-220ENST00000544910 STRIP2Q9ULQ0 834 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 TLR3O15455 904 aaKnown RBP6.16□□□□□ -1.42
VPS50-220ENST00000544910 GTF2H1P32780 548 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 TAP1Q03518 808 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 SPP2Q13103 211 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 NR1H3Q13133 447 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 TRMT10CQ7L0Y3 403 aaKnown RBP6.16□□□□□ -1.42
VPS50-220ENST00000544910 SULF1Q8IWU6 871 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 CPA5Q8WXQ8 436 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 ERP44Q9BS26 406 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 MRPL4Q9BYD3 311 aaKnown RBP6.16□□□□□ -1.42
VPS50-220ENST00000544910 ZBTB12Q9Y330 459 aaPredicted RBP6.16□□□□□ -1.42
VPS50-220ENST00000544910 ALG6Q9Y672 507 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 IGSF9BQ9UPX0 1349 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 PIK3CDO00329 1044 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 CREB3O43889 395 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 CHN1P15882 459 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 SCP2P22307 547 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 HSPA9P38646 679 aaKnown RBP6.16□□□□□ -1.42
VPS50-220ENST00000544910 OSTNP61366 133 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 BYSLQ13895 437 aaKnown RBP6.16□□□□□ -1.42
VPS50-220ENST00000544910 DARS2Q6PI48 645 aaKnown RBP6.16□□□□□ -1.42
VPS50-220ENST00000544910 ETNPPLQ8TBG4 499 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 HDAC7Q8WUI4 952 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 TSC22D3Q99576 134 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 PRMT1Q99873 361 aaKnown RBP6.16□□□□□ -1.42
VPS50-220ENST00000544910 ELAC2Q9BQ52 826 aaKnown RBP6.16□□□□□ -1.42
VPS50-220ENST00000544910 TTYH3Q9C0H2 523 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 CARD9Q9H257 536 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 NXF1Q9UBU9 619 aaKnown RBP6.16□□□□□ -1.42
VPS50-220ENST00000544910 PCDHGC5Q9Y5F6 944 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 CD2APQ9Y5K6 639 aa6.16□□□□□ -1.42
VPS50-220ENST00000544910 IGKV6D-41A0A0C4DH26 115 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 PDE2AO00408 941 aaPredicted RBP6.15□□□□□ -1.42
VPS50-220ENST00000544910 FOXN3O00409 490 aaPredicted RBP6.15□□□□□ -1.42
VPS50-220ENST00000544910 STMN1P16949 149 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 CIITAP33076 1130 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 COILP38432 576 aaPredicted RBP6.15□□□□□ -1.42
VPS50-220ENST00000544910 PSMC4P43686 418 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 CASP5P51878 434 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 YWHAGP61981 247 aaKnown RBP eCLIP6.15□□□□□ -1.42
VPS50-220ENST00000544910 GABPAQ06546 454 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 BAATQ14032 418 aaPredicted RBP6.15□□□□□ -1.42
VPS50-220ENST00000544910 SPDYE2Q495Y8 402 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 LMBRD2Q68DH5 695 aaPredicted RBP6.15□□□□□ -1.42
VPS50-220ENST00000544910 C11orf63Q6NUN7 778 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 CTAGE3PQ8IX95 158 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 TMEM35BQ8NCS4 154 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 HSPH1Q92598 858 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 PURBQ96QR8 312 aaKnown RBP6.15□□□□□ -1.42
VPS50-220ENST00000544910 RPS6KC1Q96S38 1066 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 CCT8L2Q96SF2 557 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 C2orf40Q9H1Z8 148 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 LRRC4BQ9NT99 713 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 TXLNGQ9NUQ3 528 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 PPP1R9AQ9ULJ8 1098 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 A6NJR5 290 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 EML1O00423 815 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 MEFVO15553 781 aaPredicted RBP6.15□□□□□ -1.42
VPS50-220ENST00000544910 OPHN1O60890 802 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 CLK2P49760 499 aaKnown RBP6.15□□□□□ -1.42
VPS50-220ENST00000544910 CORO7P57737 925 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 COG7P83436 770 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 PRKCEQ02156 737 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 TNFAIP2Q03169 654 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 XKR3Q5GH77 459 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 ACAD10Q6JQN1 1059 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 EPM2AIP1Q7L775 607 aaPredicted RBP6.15□□□□□ -1.42
VPS50-220ENST00000544910 ARMC2Q8NEN0 867 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 SLC35C1Q96A29 364 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 ARL8AQ96BM9 186 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 HESX1Q9UBX0 185 aa6.15□□□□□ -1.42
VPS50-220ENST00000544910 DMGDHQ9UI17 866 aaKnown RBP6.15□□□□□ -1.42
VPS50-220ENST00000544910 BAZ2AQ9UIF9 1905 aaKnown RBP6.15□□□□□ -1.42
VPS50-220ENST00000544910 MAFGO15525 162 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 INHBAP08476 426 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 SKIP12755 728 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 ITIH2P19823 946 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 SSTR3P32745 418 aaPredicted RBP6.15□□□□□ -1.43
VPS50-220ENST00000544910 CENPCQ03188 943 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 BMT2Q1RMZ1 405 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 IZUMO3Q5VZ72 239 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 CASC4Q6P4E1 433 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 EEPD1Q7L9B9 569 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 NIPA1Q7RTP0 329 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 SDCCAG8Q86SQ7 713 aaPredicted RBP6.15□□□□□ -1.43
VPS50-220ENST00000544910 TRIM50Q86XT4 487 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 RCOR2Q8IZ40 523 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 C3orf20Q8ND61 904 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 ATL2Q8NHH9 583 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 CYP2W1Q8TAV3 490 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 NLRP7Q8WX94 980 aa6.15□□□□□ -1.43
VPS50-220ENST00000544910 HEXIM2Q96MH2 286 aaKnown RBP6.15□□□□□ -1.43
VPS50-220ENST00000544910 SH2D3AQ9BRG2 576 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms