RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 KYAT1Q16773 422 aa20.88■□□□□ 0.93
DDX55-211ENST00000544429 KMT5BQ4FZB7 885 aa20.88■□□□□ 0.93
DDX55-211ENST00000544429 TPRNQ4KMQ1 711 aa20.88■□□□□ 0.93
DDX55-211ENST00000544429 SEZ6Q53EL9 994 aa20.88■□□□□ 0.93
DDX55-211ENST00000544429 ZBTB41Q5SVQ8 909 aa20.88■□□□□ 0.93
DDX55-211ENST00000544429 STXBP4Q6ZWJ1 553 aa20.88■□□□□ 0.93
DDX55-211ENST00000544429 KIAA0895Q8NCT3 520 aa20.88■□□□□ 0.93
DDX55-211ENST00000544429 IGSF21Q96ID5 467 aa20.88■□□□□ 0.93
DDX55-211ENST00000544429 ZMAT2Q96NC0 199 aaKnown RBP20.88■□□□□ 0.93
DDX55-211ENST00000544429 RPS6KC1Q96S38 1066 aa20.88■□□□□ 0.93
DDX55-211ENST00000544429 MARCH5Q9NX47 278 aa20.88■□□□□ 0.93
DDX55-211ENST00000544429 CPSF3Q9UKF6 684 aaKnown RBP20.88■□□□□ 0.93
DDX55-211ENST00000544429 SMIM28A0A1B0GU29 152 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 TTC26A0AVF1 554 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 NT5C1B-RDH14C9J2C7 533 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 NRP1O14786 923 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 RHOBTB3O94955 611 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 ALDH2P05091 517 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 THP07101 528 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 TNFSF9P41273 254 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 POU5F1Q01860 360 aaKnown RBP20.87■□□□□ 0.93
DDX55-211ENST00000544429 STK4Q13043 487 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 PSMD2Q13200 908 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 TUSC3Q13454 348 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 POSTNQ15063 836 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 PTPROQ16827 1216 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 MAFAQ8NHW3 353 aaPredicted RBP20.87■□□□□ 0.93
DDX55-211ENST00000544429 SPATA20Q8TB22 786 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 POF1BQ8WVV4 589 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 MSTO1Q9BUK6 570 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 VN1R3Q9BXE9 311 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 GBP3Q9H0R5 595 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 PLEKHA5Q9HAU0 1116 aa20.87■□□□□ 0.93
DDX55-211ENST00000544429 FSCN2O14926 492 aa20.86■□□□□ 0.93
DDX55-211ENST00000544429 TGFB1I1O43294 461 aa20.86■□□□□ 0.93
DDX55-211ENST00000544429 HARSP12081 509 aaKnown RBP20.86■□□□□ 0.93
DDX55-211ENST00000544429 GARTP22102 1010 aa20.86■□□□□ 0.93
DDX55-211ENST00000544429 YARSP54577 528 aaKnown RBP20.86■□□□□ 0.93
DDX55-211ENST00000544429 UBE2HP62256 183 aa20.86■□□□□ 0.93
DDX55-211ENST00000544429 KCNB1Q14721 858 aa20.86■□□□□ 0.93
DDX55-211ENST00000544429 ENOX2Q16206 610 aaKnown RBP20.86■□□□□ 0.93
DDX55-211ENST00000544429 CRELD2Q6UXH1 353 aaPredicted RBP20.86■□□□□ 0.93
DDX55-211ENST00000544429 RNF168Q8IYW5 571 aaPredicted RBP20.86■□□□□ 0.93
DDX55-211ENST00000544429 FAM193BQ96PV7 902 aaPredicted RBP20.86■□□□□ 0.93
DDX55-211ENST00000544429 SLC39A2Q9NP94 309 aa20.86■□□□□ 0.93
DDX55-211ENST00000544429 BRWD1Q9NSI6 2320 aa20.86■□□□□ 0.93
DDX55-211ENST00000544429 CXCL8P10145 99 aa20.85■□□□□ 0.93
DDX55-211ENST00000544429 ERVFC1P60507 584 aa20.85■□□□□ 0.93
DDX55-211ENST00000544429 COL19A1Q14993 1142 aa20.85■□□□□ 0.93
DDX55-211ENST00000544429 ZBTB6Q15916 424 aa20.85■□□□□ 0.93
DDX55-211ENST00000544429 PAAF1Q9BRP4 392 aa20.85■□□□□ 0.93
DDX55-211ENST00000544429 EXOC1Q9NV70 894 aa20.85■□□□□ 0.93
DDX55-211ENST00000544429 AGO2Q9UKV8 859 aaKnown RBP20.85■□□□□ 0.93
DDX55-211ENST00000544429 FAN1Q9Y2M0 1017 aa20.85■□□□□ 0.93
DDX55-211ENST00000544429 XIRP2A4UGR9 3374 aa20.85■□□□□ 0.93
DDX55-211ENST00000544429 IRS1P35568 1242 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 MATR3P43243 847 aaKnown RBP eCLIP20.84■□□□□ 0.93
DDX55-211ENST00000544429 KRT17Q04695 432 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 SOX4Q06945 474 aaPredicted RBP20.84■□□□□ 0.93
DDX55-211ENST00000544429 PNOCQ13519 176 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 TIGD5Q53EQ6 642 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 GLRA4Q5JXX5 417 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 DDX53Q86TM3 631 aaKnown RBP20.84■□□□□ 0.93
DDX55-211ENST00000544429 SYCP3Q8IZU3 236 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 TMEM174Q8WUU8 243 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 POMGNT1Q8WZA1 660 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 TMEM169Q96HH4 297 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 CCDC34Q96HJ3 373 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 TSPAN18Q96SJ8 248 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 CBWD1Q9BRT8 395 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 TLR9Q9NR96 1032 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 CACNG4Q9UBN1 327 aa20.84■□□□□ 0.93
DDX55-211ENST00000544429 F8W810 466 aa20.83■□□□□ 0.93
DDX55-211ENST00000544429 ACOT2P49753 483 aa20.83■□□□□ 0.93
DDX55-211ENST00000544429 SNRPFP62306 86 aaKnown RBP20.83■□□□□ 0.93
DDX55-211ENST00000544429 KNOP1Q1ED39 458 aaKnown RBP20.83■□□□□ 0.93
DDX55-211ENST00000544429 PDE12Q6L8Q7 609 aaKnown RBP20.83■□□□□ 0.93
DDX55-211ENST00000544429 C12orf56Q8IXR9 622 aa20.83■□□□□ 0.93
DDX55-211ENST00000544429 ZSWIM2Q8NEG5 633 aa20.83■□□□□ 0.93
DDX55-211ENST00000544429 NSUN3Q9H649 340 aaKnown RBP20.83■□□□□ 0.93
DDX55-211ENST00000544429 PUF60Q9UHX1 559 aaKnown RBP20.83■□□□□ 0.93
DDX55-211ENST00000544429 UNC80Q8N2C7 3258 aa20.82■□□□□ 0.92
DDX55-211ENST00000544429 TMEM189-UBE2V1I3L0A0 370 aa20.82■□□□□ 0.92
DDX55-211ENST00000544429 KIAA0391O15091 583 aaKnown RBP20.82■□□□□ 0.92
DDX55-211ENST00000544429 OR1G1P47890 313 aa20.82■□□□□ 0.92
DDX55-211ENST00000544429 FBXL18Q96ME1 805 aa20.82■□□□□ 0.92
DDX55-211ENST00000544429 ZBP1Q9H171 429 aa20.82■□□□□ 0.92
DDX55-211ENST00000544429 KCTD10Q9H3F6 313 aa20.82■□□□□ 0.92
DDX55-211ENST00000544429 RPF1Q9H9Y2 349 aaKnown RBP20.82■□□□□ 0.92
DDX55-211ENST00000544429 AGPAT3Q9NRZ7 376 aa20.82■□□□□ 0.92
DDX55-211ENST00000544429 SLC38A7Q9NVC3 462 aa20.82■□□□□ 0.92
DDX55-211ENST00000544429 STK39Q9UEW8 545 aa20.82■□□□□ 0.92
DDX55-211ENST00000544429 PRG3Q9Y2Y8 225 aaPredicted RBP20.82■□□□□ 0.92
DDX55-211ENST00000544429 IRAK3Q9Y616 596 aa20.82■□□□□ 0.92
DDX55-211ENST00000544429 SPTBN5Q9NRC6 3674 aaKnown RBP20.82■□□□□ 0.92
DDX55-211ENST00000544429 VWA8A3KMH1 1905 aa20.81■□□□□ 0.92
DDX55-211ENST00000544429 CASTOR2A6NHX0 329 aa20.81■□□□□ 0.92
DDX55-211ENST00000544429 LACTBL1A8MY62 500 aa20.81■□□□□ 0.92
DDX55-211ENST00000544429 PRPF40AO75400 957 aaKnown RBP20.81■□□□□ 0.92
DDX55-211ENST00000544429 PPP2R3AQ06190 1150 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms