RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CYP24A1	Q07973	514 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	BTG3	Q14201	252 aa	Predicted RBP	11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	SLC10A6	Q3KNW5	377 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	HSP90AA4P	Q58FG1	418 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	NOMO2	Q5JPE7	1267 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	GLRA4	Q5JXX5	417 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	CLLU1OS	Q5K130	101 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	SPOUT1	Q5T280	376 aa	Known RBP	11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	FOXR2	Q6PJQ5	311 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	CRELD2	Q6UXH1	353 aa	Predicted RBP	11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	USP37	Q86T82	979 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	BRSK2	Q8IWQ3	736 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	CD302	Q8IX05	232 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	AOPEP	Q8N6M6	819 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	KIF12	Q96FN5	646 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	SNX27	Q96L92	541 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	FBXL18	Q96ME1	805 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	ZFP42	Q96MM3	310 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	FAM193B	Q96PV7	902 aa	Predicted RBP	11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	RAD9A	Q99638	391 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	PLEKHA5	Q9HAU0	1116 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	PDE11A	Q9HCR9	933 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	KANSL3	Q9P2N6	904 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	NFE2L3	Q9Y4A8	694 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	SMIM28	A0A1B0GU29	152 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	GRXCR1	A8MXD5	290 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	GOLGA6L19	H0YKK7	550 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	SLC16A3	O15427	465 aa	Known RBP	11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	FAM189A1	O60320	539 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	DGKI	O75912	1065 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	GJB5	O95377	273 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	TH	P07101	528 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	ADRB2	P07550	413 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	TNNI1	P19237	187 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	CDK11B	P21127	795 aa	Known RBP	11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	MTIF2	P46199	727 aa	Known RBP	11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	VAMP7	P51809	220 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	AFF1	P51825	1210 aa	Known RBP	11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	RABGGTB	P53611	331 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	ZNF445	P59923	1031 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	TFAM	Q00059	246 aa	Known RBP	11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	POU5F1	Q01860	360 aa	Known RBP	11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	RASIP1	Q5U651	963 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	TCERG1L	Q5VWI1	586 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	LRRC55	Q6ZSA7	311 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	INTS8	Q75QN2	995 aa	Known RBP	11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	FAM114A1	Q8IWE2	563 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	TDH	Q8IZJ6	230 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	TMEM174	Q8WUU8	243 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	MFSD14A	Q96MC6	490 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	CASD1	Q96PB1	797 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	MED15	Q96RN5	788 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	MKNK1	Q9BUB5	465 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	MRPL9	Q9BYD2	267 aa	Known RBP	11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	ASB7	Q9H672	318 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	CBX8	Q9HC52	389 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	METTL14	Q9HCE5	456 aa	Known RBP	11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	FANCL	Q9NW38	375 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	MIOS	Q9NXC5	875 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	ARMCX3	Q9UH62	379 aa	Predicted RBP	11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	INSL6	Q9Y581	213 aa		11.02	□□□□□ -0.65
CPSF7-221	ENST00000543545	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	TTC26	A0AVF1	554 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	MAPK13	O15264	365 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	XPOT	O43592	962 aa	Known RBP	11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	TMEM191B	P0C7N4	346 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	KCNE1	P15382	129 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	TMEM132D	Q14C87	1099 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	PSMD6	Q15008	389 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	DCAF17	Q5H9S7	520 aa	Predicted RBP	11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	LMBRD2	Q68DH5	695 aa	Predicted RBP	11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	JADE1	Q6IE81	842 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	ALKAL1	Q6UXT8	129 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	FRMD5	Q7Z6J6	570 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	ZC3H3	Q8IXZ2	948 aa	Known RBP	11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	CRIPAK	Q8N1N5	446 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	FIBCD1	Q8N539	461 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	RNF214	Q8ND24	703 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	ANKRD20A12P	Q8NF67	263 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	BEST2	Q8NFU1	509 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	FAM200A	Q8TCP9	573 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	CACTIN	Q8WUQ7	758 aa	Known RBP	11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	POP1	Q99575	1024 aa	Known RBP	11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	BPIFA3	Q9BQP9	254 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	CXCL16	Q9H2A7	254 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	THAP9	Q9H5L6	903 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	MMRN2	Q9H8L6	949 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	SAMSN1	Q9NSI8	373 aa	Known RBP	11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	SLC38A7	Q9NVC3	462 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	CNTN3	Q9P232	1028 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	MSRA	Q9UJ68	235 aa		11.01	□□□□□ -0.65
CPSF7-221	ENST00000543545	PES1	O00541	588 aa	Known RBP	11	□□□□□ -0.65
CPSF7-221	ENST00000543545	PTGES	O14684	152 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	IKBKB	O14920	756 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	MEFV	O15553	781 aa	Predicted RBP	11	□□□□□ -0.65
CPSF7-221	ENST00000543545	STX10	O60499	249 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	PHACTR2	O75167	634 aa		11	□□□□□ -0.65
CPSF7-221	ENST00000543545	CLSTN1	O94985	981 aa		11	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms