RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 MGAT3Q09327 533 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 MEA1Q16626 185 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 ZNF516Q92618 1163 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 WNT8BQ93098 351 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 APEX2Q9UBZ4 518 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 CHRNA1P02708 482 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 ACTN1P12814 892 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 THPOP40225 353 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 WNT7BP56706 349 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 ENOX2Q16206 610 aaKnown RBP19.19■□□□□ 0.66
CLIP1-215ENST00000541108 FAM26DQ5JW98 314 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 CYP26C1Q6V0L0 522 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 RRAGAQ7L523 313 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 CEP120Q8N960 986 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 INTS2Q9H0H0 1204 aaKnown RBP19.19■□□□□ 0.66
CLIP1-215ENST00000541108 ASB7Q9H672 318 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 TRMT13Q9NUP7 481 aaKnown RBP19.19■□□□□ 0.66
CLIP1-215ENST00000541108 RAB20Q9NX57 234 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 PYCARDQ9ULZ3 195 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 SQORQ9Y6N5 450 aa19.19■□□□□ 0.66
CLIP1-215ENST00000541108 ZC3H11AO75152 810 aaKnown RBP eCLIP19.18■□□□□ 0.66
CLIP1-215ENST00000541108 GRM5P41594 1212 aa19.18■□□□□ 0.66
CLIP1-215ENST00000541108 CDK7P50613 346 aa19.18■□□□□ 0.66
CLIP1-215ENST00000541108 PDXDC1Q6P996 788 aa19.18■□□□□ 0.66
CLIP1-215ENST00000541108 CD302Q8IX05 232 aa19.18■□□□□ 0.66
CLIP1-215ENST00000541108 ACAP3Q96P50 834 aa19.18■□□□□ 0.66
CLIP1-215ENST00000541108 NLRC4Q9NPP4 1024 aa19.18■□□□□ 0.66
CLIP1-215ENST00000541108 TOPORSQ9NS56 1045 aaPredicted RBP19.18■□□□□ 0.66
CLIP1-215ENST00000541108 NOC2LQ9Y3T9 749 aaKnown RBP19.18■□□□□ 0.66
CLIP1-215ENST00000541108 LRRC53A6NM62 1247 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 RPS6KA5O75582 802 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 APBA1Q02410 837 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 DUOXA2Q1HG44 320 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 TRIM71Q2Q1W2 868 aaKnown RBP19.17■□□□□ 0.66
CLIP1-215ENST00000541108 WDR59Q6PJI9 974 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 FAM228AQ86W67 206 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 FMNL3Q8IVF7 1028 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 USP38Q8NB14 1042 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 ZNF333Q96JL9 665 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 CHST12Q9NRB3 414 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 AIPL1Q9NZN9 384 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 PIN4Q9Y237 131 aaKnown RBP19.17■□□□□ 0.66
CLIP1-215ENST00000541108 GPR182O15218 404 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 OSTNP61366 133 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 PHLDB3Q6NSJ2 640 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 NT5DC4Q86YG4 428 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 TAS1R2Q8TE23 839 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 DHX38Q92620 1227 aaKnown RBP19.17■□□□□ 0.66
CLIP1-215ENST00000541108 FAM81BQ96LP2 452 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 SPAG5Q96R06 1193 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 CCDC94Q9BW85 323 aaPredicted RBP19.17■□□□□ 0.66
CLIP1-215ENST00000541108 STK33Q9BYT3 514 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 CRISPLD2Q9H0B8 497 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 PLEKHA5Q9HAU0 1116 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 KCND1Q9NSA2 647 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 FHOD1Q9Y613 1164 aa19.17■□□□□ 0.66
CLIP1-215ENST00000541108 MROH7Q68CQ1 1323 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 DNAH12Q6ZR08 3092 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 TULP1O00294 542 aaPredicted RBP19.16■□□□□ 0.66
CLIP1-215ENST00000541108 CXCL8P10145 99 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 CTCFP49711 727 aaPredicted RBP19.16■□□□□ 0.66
CLIP1-215ENST00000541108 JAM2P57087 298 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 SLC10A6Q3KNW5 377 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 SFMBT2Q5VUG0 894 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 TDRD10Q5VZ19 366 aaKnown RBP19.16■□□□□ 0.66
CLIP1-215ENST00000541108 TMEM192Q8IY95 271 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 SEMA4DQ92854 862 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 ARMC5Q96C12 935 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 TRIM6Q9C030 488 aaPredicted RBP19.16■□□□□ 0.66
CLIP1-215ENST00000541108 DNAJC12Q9UKB3 198 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 ST3GAL5Q9UNP4 418 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 BRCA2P51587 3418 aa19.16■□□□□ 0.66
CLIP1-215ENST00000541108 PTPRJQ12913 1337 aa19.15■□□□□ 0.66
CLIP1-215ENST00000541108 ZNF500O60304 480 aaPredicted RBP19.15■□□□□ 0.66
CLIP1-215ENST00000541108 SGPL1O95470 568 aa19.15■□□□□ 0.66
CLIP1-215ENST00000541108 NPTXRO95502 500 aa19.15■□□□□ 0.66
CLIP1-215ENST00000541108 MYCP01106 439 aaPredicted RBP19.15■□□□□ 0.66
CLIP1-215ENST00000541108 CTSHP09668 335 aa19.15■□□□□ 0.66
CLIP1-215ENST00000541108 BIRC3Q13489 604 aa19.15■□□□□ 0.66
CLIP1-215ENST00000541108 IQCEQ6IPM2 695 aa19.15■□□□□ 0.66
CLIP1-215ENST00000541108 FAM212AQ96EL1 285 aa19.15■□□□□ 0.66
CLIP1-215ENST00000541108 LACTBL1A8MY62 500 aa19.14■□□□□ 0.66
CLIP1-215ENST00000541108 LBX1P52954 281 aa19.14■□□□□ 0.66
CLIP1-215ENST00000541108 FBXO47Q5MNV8 452 aa19.14■□□□□ 0.66
CLIP1-215ENST00000541108 LMBRD2Q68DH5 695 aaPredicted RBP19.14■□□□□ 0.66
CLIP1-215ENST00000541108 CCDC170Q8IYT3 715 aa19.14■□□□□ 0.66
CLIP1-215ENST00000541108 OR5B17Q8NGF7 314 aa19.14■□□□□ 0.66
CLIP1-215ENST00000541108 CAGE1Q8TC20 777 aa19.14■□□□□ 0.66
CLIP1-215ENST00000541108 NT5C1BQ96P26 610 aa19.14■□□□□ 0.66
CLIP1-215ENST00000541108 CHP1Q99653 195 aa19.14■□□□□ 0.66
CLIP1-215ENST00000541108 EIF2AQ9BY44 585 aaKnown RBP19.14■□□□□ 0.66
CLIP1-215ENST00000541108 TRPV6Q9H1D0 765 aa19.14■□□□□ 0.66
CLIP1-215ENST00000541108 C2CD2Q9Y426 696 aa19.14■□□□□ 0.66
CLIP1-215ENST00000541108 ANK1P16157 1881 aa19.14■□□□□ 0.65
CLIP1-215ENST00000541108 SOWAHDA6NJG2 315 aa19.14■□□□□ 0.65
CLIP1-215ENST00000541108 CKBP12277 381 aa19.14■□□□□ 0.65
CLIP1-215ENST00000541108 YARSP54577 528 aaKnown RBP19.14■□□□□ 0.65
CLIP1-215ENST00000541108 WDR44Q5JSH3 913 aa19.14■□□□□ 0.65
CLIP1-215ENST00000541108 TRAPPC11Q7Z392 1133 aa19.14■□□□□ 0.65
CLIP1-215ENST00000541108 U2AF1L4Q8WU68 220 aaKnown RBP19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms