RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 TROVE2P10155 538 aaKnown RBP eCLIP13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 IKQ13123 557 aaPredicted RBP13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 ARHGAP22Q7Z5H3 698 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 ZC3H3Q8IXZ2 948 aaKnown RBP13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 PDCD7Q8N8D1 485 aaKnown RBP13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 ANKLE1Q8NAG6 615 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 EZH1Q92800 747 aaPredicted RBP13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 GORASP1Q9BQQ3 440 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 HEMGNQ9BXL5 484 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 ATP8B3O60423 1300 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 COL5A2P05997 1499 aaPredicted RBP13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 USP17L10C9JJH3 530 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 CHMP2AO43633 222 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 SMARCA1P28370 1054 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 YARSP54577 528 aaKnown RBP13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 KHDC1Q4VXA5 237 aaKnown RBP13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 DPP8Q6V1X1 898 aaPredicted RBP13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 NLRP9Q7RTR0 991 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 MTDHQ86UE4 582 aaKnown RBP13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 TRABDQ9H4I3 376 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 STARD13Q9Y3M8 1113 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 PTPN4P29074 926 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 WDR4P57081 412 aaKnown RBP13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 SGSM1Q2NKQ1 1148 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 HYIQ5T013 277 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 GRK7Q8WTQ7 553 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 TRAIPQ9BWF2 469 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 ANO3Q9BYT9 981 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 JMJD4Q9H9V9 463 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 TMEM165Q9HC07 324 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 AAASQ9NRG9 546 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 CHST7Q9NS84 486 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 XIRP1Q702N8 1843 aaKnown RBP13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 KRT36O76013 467 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 ZCCHC18P0CG32 403 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 CETPP11597 493 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 CETN2P41208 172 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 STAT4Q14765 748 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 RFWD3Q6PCD5 774 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 C16orf86Q6ZW13 317 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 PHLDB2Q86SQ0 1253 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 SYT2Q8N9I0 419 aaPredicted RBP13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 DYNC1I2Q13409 638 aaKnown RBP13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 INTS5Q6P9B9 1019 aaKnown RBP13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 TPH2Q8IWU9 490 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 FAM178BQ8IXR5 827 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 MAIP1Q8WWC4 291 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 ITFG2Q969R8 447 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 EPAS1Q99814 870 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 SAYSD1Q9NPB0 183 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 OVGP1Q12889 678 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 IZUMO3Q5VZ72 239 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 STXBP4Q6ZWJ1 553 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 NBPF5PQ86XG9 351 aaPredicted RBP13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 PPM1KQ8N3J5 372 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 PCDHA3Q9Y5H8 950 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 PCDHA1Q9Y5I3 950 aa13.67□□□□□ -0.22
SFSWAP-209ENST00000540469 ADGRA3Q8IWK6 1321 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 RNF8O76064 485 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 HAUS5O94927 633 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 GSTA2P09210 222 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 ALAS1P13196 640 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 KPNB1Q14974 876 aaKnown RBP13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 GRIK5Q16478 980 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 PHLDB3Q6NSJ2 640 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 CCDC62Q6P9F0 684 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 MTHFD1LQ6UB35 978 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 ZNF333Q96JL9 665 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 GPR101Q96P66 508 aaPredicted RBP13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 DDX50Q9BQ39 737 aaKnown RBP13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 PCIF1Q9H4Z3 704 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 EYA4O95677 639 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 SF3B3Q15393 1217 aaKnown RBP13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 TBC1D25Q3MII6 688 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 LRRC74BQ6ZQY2 392 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 TRIM74Q86UV6 250 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 TRIM73Q86UV7 250 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 CCNJLQ8IV13 435 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 RPGRQ92834 1020 aaKnown RBP13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 SLC7A6OSQ96CW6 309 aaPredicted RBP13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 RBM15Q96T37 977 aaKnown RBP eCLIP13.66□□□□□ -0.221e-7■■■■□ 22
SFSWAP-209ENST00000540469 RPS6KL1Q9Y6S9 549 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 ROBO3Q96MS0 1386 aa13.66□□□□□ -0.22
SFSWAP-209ENST00000540469 CCDC22O60826 627 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 DSTYKQ6XUX3 929 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 ENDOVQ8N8Q3 282 aaKnown RBP13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 ACP6Q9NPH0 428 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 USP20Q9Y2K6 914 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 RREB1Q92766 1687 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 MAGEA13PA6NCF6 341 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 TGFB1I1O43294 461 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 SLIT2O94813 1529 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 BAG2O95816 211 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 PLS3P13797 630 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 CHRNB2P17787 502 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 MAN1A1P33908 653 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 GCLMP48507 274 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 CAV1Q03135 178 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 DYDC2Q96IM9 177 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 CFAP57Q96MR6 1250 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms