RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 GOLGA5Q8TBA6 731 aa13.14□□□□□ -0.31
CHD4-203ENST00000535717 FAM161BQ96MY7 647 aa13.14□□□□□ -0.31
CHD4-203ENST00000535717 ZMAT2Q96NC0 199 aaKnown RBP13.14□□□□□ -0.31
CHD4-203ENST00000535717 SAMD11Q96NU1 681 aa13.14□□□□□ -0.31
CHD4-203ENST00000535717 PPP1R10Q96QC0 940 aaKnown RBP13.14□□□□□ -0.31
CHD4-203ENST00000535717 FAM213AQ9BRX8 229 aa13.14□□□□□ -0.31
CHD4-203ENST00000535717 GTPBP4Q9BZE4 634 aaKnown RBP13.14□□□□□ -0.31
CHD4-203ENST00000535717 RPF1Q9H9Y2 349 aaKnown RBP13.14□□□□□ -0.31
CHD4-203ENST00000535717 HSPBP1Q9NZL4 362 aa13.14□□□□□ -0.31
CHD4-203ENST00000535717 CGNQ9P2M7 1197 aaKnown RBP13.14□□□□□ -0.31
CHD4-203ENST00000535717 DNAJB4Q9UDY4 337 aa13.14□□□□□ -0.31
CHD4-203ENST00000535717 NLRC5Q86WI3 1866 aa13.14□□□□□ -0.31
CHD4-203ENST00000535717 TRIP11Q15643 1979 aa13.14□□□□□ -0.31
CHD4-203ENST00000535717 CITO14578 2027 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 RALGAPA2Q2PPJ7 1873 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 SMIM28A0A1B0GU29 152 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 LACTBL1A8MY62 500 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 C5orf67F2Z3F1 127 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 PDXKO00764 312 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 KIAA0391O15091 583 aaKnown RBP13.13□□□□□ -0.31
CHD4-203ENST00000535717 EXTL3O43909 919 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 ZC3H11AO75152 810 aaKnown RBP eCLIP13.13□□□□□ -0.31
CHD4-203ENST00000535717 THP07101 528 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 ADRB2P07550 413 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 KCNE1P15382 129 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 CD44P16070 742 aaKnown RBP13.13□□□□□ -0.31
CHD4-203ENST00000535717 LAG3P18627 525 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 PBX3P40426 434 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 CYP2J2P51589 502 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 BCAR1P56945 870 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 DSC1Q08554 894 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 GRIK3Q13003 919 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 GRIN2CQ14957 1233 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 NAB2Q15742 525 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 KCNT2Q6UVM3 1135 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 C12orf56Q8IXR9 622 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 COLGALT2Q8IYK4 626 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 ADSSL1Q8N142 457 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 DEFB123Q8N688 67 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 FBXO22Q8NEZ5 403 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 ZNF558Q96NG5 402 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 FAM193BQ96PV7 902 aaPredicted RBP13.13□□□□□ -0.31
CHD4-203ENST00000535717 PLEKHA5Q9HAU0 1116 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 AAASQ9NRG9 546 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 CNTN3Q9P232 1028 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 RWDD3Q9Y3V2 267 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 TDRD15B5MCY1 1934 aaKnown RBP13.13□□□□□ -0.31
CHD4-203ENST00000535717 MYO9BQ13459 2157 aa13.13□□□□□ -0.31
CHD4-203ENST00000535717 PPP1R3GB7ZBB8 358 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 RFXAPO00287 272 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 LDHAP00338 332 aaKnown RBP13.12□□□□□ -0.31
CHD4-203ENST00000535717 RB1P06400 928 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 GALTP07902 379 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 SLC11A1P49279 550 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 ALDH7A1P49419 539 aaKnown RBP13.12□□□□□ -0.31
CHD4-203ENST00000535717 WNT7BP56706 349 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 POU5F1Q01860 360 aaKnown RBP13.12□□□□□ -0.31
CHD4-203ENST00000535717 PPP2R3AQ06190 1150 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 SPAG1Q07617 926 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 ZCWPW2Q504Y3 356 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 CBWD2Q8IUF1 395 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 GPD1LQ8N335 351 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 TRIML1Q8N9V2 468 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 KLHL23Q8NBE8 558 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 XXYLT1Q8NBI6 393 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 NOC3LQ8WTT2 800 aaKnown RBP13.12□□□□□ -0.31
CHD4-203ENST00000535717 TMEM174Q8WUU8 243 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 FAM212AQ96EL1 285 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 FBXL18Q96ME1 805 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 PLVAPQ9BX97 442 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 PRDM12Q9H4Q4 367 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 DMAC2Q9NW81 257 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 CACNG4Q9UBN1 327 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 TRAF3IP3Q9Y228 551 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 PCDHB12Q9Y5F1 795 aa13.12□□□□□ -0.31
CHD4-203ENST00000535717 NT5C1B-RDH14C9J2C7 533 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 H3BNC9 293 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 CALUO43852 315 aaPredicted RBP13.11□□□□□ -0.31
CHD4-203ENST00000535717 NR3C1P04150 777 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 SOX4Q06945 474 aaPredicted RBP13.11□□□□□ -0.31
CHD4-203ENST00000535717 TUSC3Q13454 348 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 GPM6BQ13491 265 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 ZBTB6Q15916 424 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 CENPPQ6IPU0 288 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 TMEM173Q86WV6 379 aaPredicted RBP13.11□□□□□ -0.31
CHD4-203ENST00000535717 SLC9A9Q8IVB4 645 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 BRSK2Q8IWQ3 736 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 SLC39A11Q8N1S5 342 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 GDPD5Q8WTR4 605 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 BCL7CQ8WUZ0 217 aaPredicted RBP13.11□□□□□ -0.31
CHD4-203ENST00000535717 P2RX5Q93086 422 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 C18orf25Q96B23 403 aaPredicted RBP13.11□□□□□ -0.31
CHD4-203ENST00000535717 TMEM175Q9BSA9 504 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 C11orf84Q9BUA3 381 aaPredicted RBP13.11□□□□□ -0.31
CHD4-203ENST00000535717 KIAA1586Q9HCI6 787 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 RBAKQ9NYW8 714 aaPredicted RBP13.11□□□□□ -0.31
CHD4-203ENST00000535717 SPG21Q9NZD8 308 aa13.11□□□□□ -0.31
CHD4-203ENST00000535717 ANK1P16157 1881 aa13.1□□□□□ -0.31
CHD4-203ENST00000535717 CASTOR2A6NHX0 329 aa13.1□□□□□ -0.31
CHD4-203ENST00000535717 ZNF233A6NK53 670 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms