RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 FCRL3Q96P31 734 aaPredicted RBP7.23□□□□□ -1.25
USP28-202ENST00000535607 SLC12A9Q9BXP2 914 aa7.23□□□□□ -1.25
USP28-202ENST00000535607 LRRC2Q9BYS8 371 aa7.23□□□□□ -1.25
USP28-202ENST00000535607 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.23□□□□□ -1.25
USP28-202ENST00000535607 NCOA5Q9HCD5 579 aaKnown RBP7.23□□□□□ -1.25
USP28-202ENST00000535607 BATF3Q9NR55 127 aa7.23□□□□□ -1.25
USP28-202ENST00000535607 RNF14Q9UBS8 474 aa7.23□□□□□ -1.25
USP28-202ENST00000535607 NIP7Q9Y221 180 aaKnown RBP eCLIP7.23□□□□□ -1.25
USP28-202ENST00000535607 MRPS23Q9Y3D9 190 aaKnown RBP7.23□□□□□ -1.25
USP28-202ENST00000535607 CAPN7Q9Y6W3 813 aa7.23□□□□□ -1.25
USP28-202ENST00000535607 NEDD4P46934 1319 aa7.23□□□□□ -1.25
USP28-202ENST00000535607 DNAJC25-GNG10A0A024R161 153 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 A0A087WWV3 80 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 SCO2A0A1W2PP80 73 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 N4BP3O15049 544 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 TBX1O43435 398 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 NTSR2O95665 410 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 GYS1P13807 737 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 IFNGR1P15260 489 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 GCFC2P16383 781 aaKnown RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 PRLRP16471 622 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 PAMP19021 973 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 GPTP24298 496 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 TNFRSF8P28908 595 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 L1CAMP32004 1257 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 ELF1P32519 619 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 IL15P40933 162 aaPredicted RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 PPP1R2P41236 205 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 SARSP49591 514 aaKnown RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 VAV2P52735 878 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 GFRA1P56159 465 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 PPP2R5BQ15173 497 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 SNCBQ16143 134 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 FAM209AQ5JX71 171 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 CEP85LQ5SZL2 805 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 CCDC181Q5TID7 509 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 PAPD7Q5XG87 772 aaKnown RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 RCSD1Q6JBY9 416 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 CCDC121Q6ZUS5 278 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 STOX1Q6ZVD7 989 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 USP53Q70EK8 1073 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 AMIGO3Q86WK7 504 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 PPIL6Q8IXY8 311 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 TEX11Q8IYF3 940 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 NLGN1Q8N2Q7 840 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 MMGT1Q8N4V1 131 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 OR8K1Q8NGG5 319 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 FERMT2Q96AC1 680 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 RSRC1Q96IZ7 334 aaKnown RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 FCRL2Q96LA5 508 aaPredicted RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 ALS2CR12Q96Q35 445 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 SELENOOQ9BVL4 669 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 FOXP1Q9H334 677 aaPredicted RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 LUC7LQ9NQ29 371 aaKnown RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 ABHD10Q9NUJ1 306 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 AP5S1Q9NUS5 200 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 SLAMF8Q9P0V8 285 aa7.22□□□□□ -1.25
USP28-202ENST00000535607 MAGEC2Q9UBF1 373 aaPredicted RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 ADD3Q9UEY8 706 aaKnown RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 LIMA1Q9UHB6 759 aaKnown RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 TRMT112Q9UI30 125 aaKnown RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 EPN1Q9Y6I3 576 aaPredicted RBP7.22□□□□□ -1.25
USP28-202ENST00000535607 NPHP3-ACAD11A0A0J9YXS1 232 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 GOLGA6L10A0A0M3HER8 536 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 DTNBO60941 627 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 TACC1O75410 805 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 NDUFA10O95299 355 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 WNT11O96014 354 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 ESR1P03372 595 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 PRNPP04156 253 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 IFIT1P09914 478 aaKnown RBP7.21□□□□□ -1.26
USP28-202ENST00000535607 CD8BP10966 210 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 TCP1P17987 556 aaKnown RBP7.21□□□□□ -1.26
USP28-202ENST00000535607 CASP14P31944 242 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 PBX1P40424 430 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 TFCP2Q12800 502 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 KIF5AQ12840 1032 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 SQSTM1Q13501 440 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 LAPTM5Q13571 262 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 PLCL1Q15111 1095 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 PTPAQ15257 358 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 SPA17Q15506 151 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 CCDC40Q4G0X9 1142 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 PREPLQ4J6C6 727 aaPredicted RBP7.21□□□□□ -1.26
USP28-202ENST00000535607 CCDC122Q5T0U0 273 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 HLA-DQA1Q5Y7H0 255 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 KRT40Q6A162 431 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 RAD9BQ6WBX8 426 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 NFXL1Q6ZNB6 911 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 DDX46Q7L014 1031 aaKnown RBP7.21□□□□□ -1.26
USP28-202ENST00000535607 DEFB132Q7Z7B7 95 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 NOSTRINQ8IVI9 506 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 FAM114A1Q8IWE2 563 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 IFT20Q8IY31 132 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 TMTC2Q8N394 836 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 TRIM58Q8NG06 486 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 CCHCR1Q8TD31 782 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 CCDC47Q96A33 483 aaKnown RBP7.21□□□□□ -1.26
USP28-202ENST00000535607 JAKMIP2Q96AA8 810 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 ALPK1Q96QP1 1244 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms