RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MFSD5Q6N075 450 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 PIGWQ7Z7B1 504 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 CCDC25Q86WR0 208 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 LRRC34Q8IZ02 419 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 FUKQ8N0W3 1084 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 CCDC197Q8NCU1 140 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 FBXL13Q8NEE6 735 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 SYTL5Q8TDW5 730 aaPredicted RBP20.61■□□□□ 0.89
VPS28-213ENST00000530983 C1orf54Q8WWF1 131 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 HVCN1Q96D96 273 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 NT5C1BQ96P26 610 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 AAASQ9NRG9 546 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 DONSONQ9NYP3 566 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 WDR81Q562E7 1941 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 ATP9AO75110 1047 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 ATP2C2O75185 946 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 CCNE2O96020 404 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 EIF2AK2P19525 551 aaKnown RBP20.61■□□□□ 0.89
VPS28-213ENST00000530983 NPTX2P47972 431 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 PPP1R7Q15435 360 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 GMLQ99445 158 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 HAUS2Q9NVX0 235 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 RAB20Q9NX57 234 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 EXOC7Q9UPT5 735 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 RAD17O75943 681 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 CALCAP01258 141 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 GHRP10912 638 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 PSMC5P62195 406 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 KRT17Q04695 432 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 CALCOCO2Q13137 446 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 XKR9Q5GH70 373 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 SLC39A4Q6P5W5 647 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 MCF2L2Q86YR7 1114 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 CPXCR1Q8N123 301 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 SLC17A8Q8NDX2 589 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 DDX23Q9BUQ8 820 aaKnown RBP20.6■□□□□ 0.89
VPS28-213ENST00000530983 STMN4Q9H169 189 aaPredicted RBP20.6■□□□□ 0.89
VPS28-213ENST00000530983 CDC42EP4Q9H3Q1 356 aaKnown RBP20.6■□□□□ 0.89
VPS28-213ENST00000530983 HOMER2Q9NSB8 354 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 CLEC16AQ2KHT3 1053 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 CCDC38Q502W7 563 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 SGO2Q562F6 1265 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 CYB5D1Q6P9G0 228 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 TRMT10CQ7L0Y3 403 aaKnown RBP20.6■□□□□ 0.89
VPS28-213ENST00000530983 TAAR1Q96RJ0 339 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 ZNF341Q9BYN7 854 aa20.6■□□□□ 0.89
VPS28-213ENST00000530983 DENND3A2RUS2 1198 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 CCT8L1PA6NM43 557 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 PGM5Q15124 567 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 PREPLQ4J6C6 727 aaPredicted RBP20.59■□□□□ 0.89
VPS28-213ENST00000530983 TMC2Q8TDI7 906 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 MFSD14AQ96MC6 490 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 FBXL18Q96ME1 805 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 TRIM7Q9C029 511 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 WHRNQ9P202 907 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 ANAPC7Q9UJX3 599 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 ZBTB12Q9Y330 459 aaPredicted RBP20.59■□□□□ 0.89
VPS28-213ENST00000530983 CEP83Q9Y592 693 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 ASNSP08243 561 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 RDXP35241 583 aaKnown RBP20.59■□□□□ 0.89
VPS28-213ENST00000530983 XRCC4Q13426 336 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 SNX1Q13596 522 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 CNGA2Q16280 664 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 LONRF1Q17RB8 773 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 RHBDF2Q6PJF5 856 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 SV2AQ7L0J3 742 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 EXOC3L1Q86VI1 746 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 BSNDQ8WZ55 320 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 KIFAP3Q92845 792 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 ROPN1BQ9BZX4 212 aaPredicted RBP20.59■□□□□ 0.89
VPS28-213ENST00000530983 ROPN1Q9HAT0 212 aaPredicted RBP20.59■□□□□ 0.89
VPS28-213ENST00000530983 RAVER2Q9HCJ3 691 aaKnown RBP20.59■□□□□ 0.89
VPS28-213ENST00000530983 CHST7Q9NS84 486 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 MCM8Q9UJA3 840 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 SUFUQ9UMX1 484 aa20.59■□□□□ 0.89
VPS28-213ENST00000530983 C21orf2O43822 256 aa20.58■□□□□ 0.89
VPS28-213ENST00000530983 IFNAR2P48551 515 aa20.58■□□□□ 0.89
VPS28-213ENST00000530983 CYP24A1Q07973 514 aa20.58■□□□□ 0.89
VPS28-213ENST00000530983 SF3A3Q12874 501 aaKnown RBP eCLIP20.58■□□□□ 0.893e-6■■■■□ 25.6
VPS28-213ENST00000530983 DMP1Q13316 513 aaPredicted RBP20.58■□□□□ 0.89
VPS28-213ENST00000530983 ITIH4Q14624 930 aa20.58■□□□□ 0.89
VPS28-213ENST00000530983 ANO5Q75V66 913 aa20.58■□□□□ 0.89
VPS28-213ENST00000530983 ANKS4BQ8N8V4 417 aa20.58■□□□□ 0.89
VPS28-213ENST00000530983 SGSM3Q96HU1 749 aa20.58■□□□□ 0.89
VPS28-213ENST00000530983 HERPUD2Q9BSE4 406 aa20.58■□□□□ 0.89
VPS28-213ENST00000530983 PLVAPQ9BX97 442 aa20.58■□□□□ 0.89
VPS28-213ENST00000530983 CCDC113Q9H0I3 377 aa20.58■□□□□ 0.89
VPS28-213ENST00000530983 ANKEF1Q9NU02 776 aa20.58■□□□□ 0.89
VPS28-213ENST00000530983 WDR64B1ANS9 1081 aa20.58■□□□□ 0.88
VPS28-213ENST00000530983 DNAJC8O75937 253 aaPredicted RBP20.58■□□□□ 0.88
VPS28-213ENST00000530983 ACSL3O95573 720 aa20.58■□□□□ 0.88
VPS28-213ENST00000530983 IVDP26440 423 aa20.58■□□□□ 0.88
VPS28-213ENST00000530983 MAPK4P31152 587 aa20.58■□□□□ 0.88
VPS28-213ENST00000530983 CHKAP35790 457 aa20.58■□□□□ 0.88
VPS28-213ENST00000530983 RPS6P62753 249 aaKnown RBP20.58■□□□□ 0.88
VPS28-213ENST00000530983 TAOK1Q7L7X3 1001 aa20.58■□□□□ 0.88
VPS28-213ENST00000530983 OGFOD1Q8N543 542 aa20.58■□□□□ 0.88
VPS28-213ENST00000530983 ATG4AQ8WYN0 398 aa20.58■□□□□ 0.88
VPS28-213ENST00000530983 PI4K2AQ9BTU6 479 aa20.58■□□□□ 0.88
VPS28-213ENST00000530983 PGAP2Q9UHJ9 254 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms