RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 TTMPQ5BVD1 217 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 EMC10Q5UCC4 262 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 SLC9A9Q8IVB4 645 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 SLC30A5Q8TAD4 765 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 BBXQ8WY36 941 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 FIZ1Q96SL8 496 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 HINFPQ9BQA5 517 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 NIFKQ9BYG3 293 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 POLD4Q9HCU8 107 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 AJAP1Q9UKB5 411 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 CENPFP49454 3210 aa17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 MYH9P35579 1960 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-213ENST00000510187 F8VZ95 297 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 EIF3HO15372 352 aaKnown RBP eCLIP17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 FMO5P49326 533 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 DNA2P51530 1060 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 PLCB4Q15147 1175 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 BRDTQ58F21 947 aaPredicted RBP17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 MAP3K21Q5TCX8 1036 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 LRIG3Q6UXM1 1119 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 MAEAQ7L5Y9 396 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 ZNF720Q7Z2F6 126 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 ATP8B4Q8TF62 1192 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 IFT81Q8WYA0 676 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 VTI1AQ96AJ9 217 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 C16orf70Q9BSU1 422 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 TTC7AQ9ULT0 858 aaPredicted RBP17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 TRPC6Q9Y210 931 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 FRMD4BQ9Y2L6 1034 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 PTCH2Q9Y6C5 1203 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 TMEM253P0C7T8 217 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 RARBP10826 455 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 NMT1P30419 496 aaKnown RBP17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 GRK4P32298 578 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 KCNA1Q09470 495 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 DNAJC21Q5F1R6 531 aaKnown RBP17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 FOXR1Q6PIV2 292 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 PEX26Q7Z412 305 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 FAM178BQ8IXR5 827 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 TMEM174Q8WUU8 243 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 RASSF4Q9H2L5 321 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 SLITRK6Q9H5Y7 841 aa17.3■□□□□ 0.36
SQSTM1-213ENST00000510187 SFI1A8K8P3 1242 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 H3BRB1 525 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 CEP104O60308 925 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 HIP1RO75146 1068 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 DGAT1O75907 488 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 INHAP05111 366 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 FAM153BP0C7A2 387 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 BEX3Q00994 111 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 ALCAMQ13740 583 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 FSCN1Q16658 493 aaKnown RBP17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 FAM153CQ494X1 144 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 ARL8AQ96BM9 186 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 SYT11Q9BT88 431 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 RNPEPQ9H4A4 650 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 TUT1Q9H6E5 874 aaKnown RBP17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 AGPAT3Q9NRZ7 376 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 FAM153AQ9UHL3 310 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 RSPH14Q9UHP6 348 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 LCMT1Q9UIC8 334 aa17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 NOC2LQ9Y3T9 749 aaKnown RBP17.29■□□□□ 0.36
SQSTM1-213ENST00000510187 GRIN2DO15399 1336 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 EVI5O60447 810 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 C6orf222P0C671 652 aaPredicted RBP17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 MAPTP10636 758 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 POLGP54098 1239 aaPredicted RBP17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 KDM7AQ6ZMT4 941 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 NT5DC3Q86UY8 548 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 METTL13Q8N6R0 699 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 OLIG1Q8TAK6 271 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 LNX1Q8TBB1 728 aaPredicted RBP17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 U2AF1L4Q8WU68 220 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 PIK3R5Q8WYR1 880 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 RFFLQ8WZ73 363 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 LRRC45Q96CN5 670 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 HES6Q96HZ4 224 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 TIPINQ9BVW5 301 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 STRA6Q9BX79 667 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 INTS2Q9H0H0 1204 aaKnown RBP17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 SPC25Q9HBM1 224 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 HTTP42858 3142 aa17.28■□□□□ 0.36
SQSTM1-213ENST00000510187 ESYT3A0FGR9 886 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 ZSCAN5CA6NGD5 496 aaPredicted RBP17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 ZNF233A6NK53 670 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 ZEB2O60315 1214 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 HBP1O60381 514 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 PPP1R37O75864 691 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 PGK1P00558 417 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 CORO7P57737 925 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 GJA9P57773 515 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 GNGT1P63211 74 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 TARBP2Q15633 366 aaKnown RBP17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 CLUL1Q15846 466 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 PPP2R5EQ16537 467 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 FAM102BQ5T8I3 360 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 KLHL7Q8IXQ5 586 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 SLC7A3Q8WY07 619 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 ATP6V0A4Q9HBG4 840 aa17.27■□□□□ 0.36
SQSTM1-213ENST00000510187 APEX2Q9UBZ4 518 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms