RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 JAM2P57087 298 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 NCBP1Q09161 790 aaKnown RBP12.44□□□□□ -0.42
C9orf3-220ENST00000489318 SMYD5Q6GMV2 418 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 WDR59Q6PJI9 974 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 SV2AQ7L0J3 742 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 CDR2LQ86X02 465 aaPredicted RBP12.44□□□□□ -0.42
C9orf3-220ENST00000489318 EHBP1Q8NDI1 1231 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 FBXL13Q8NEE6 735 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 ZNF397Q8NF99 534 aaPredicted RBP12.44□□□□□ -0.42
C9orf3-220ENST00000489318 CPLX3Q8WVH0 158 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 ZNF516Q92618 1163 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 DEFB118Q96PH6 123 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 FNBP1Q96RU3 617 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 ASB7Q9H672 318 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 PDE11AQ9HCR9 933 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 TRMT13Q9NUP7 481 aaKnown RBP12.44□□□□□ -0.42
C9orf3-220ENST00000489318 GINS2Q9Y248 185 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 PCNTO95613 3336 aa12.44□□□□□ -0.42
C9orf3-220ENST00000489318 MROH7Q68CQ1 1323 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 LRRC53A6NM62 1247 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 STAG3L1P0CL83 205 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 DLATP10515 647 aaKnown RBP12.43□□□□□ -0.42
C9orf3-220ENST00000489318 ACTN1P12814 892 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 MNX1P50219 401 aaPredicted RBP12.43□□□□□ -0.42
C9orf3-220ENST00000489318 POLR2FP61218 127 aaKnown RBP12.43□□□□□ -0.42
C9orf3-220ENST00000489318 APBA1Q02410 837 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 TMEM132AQ24JP5 1023 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 SEZ6Q53EL9 994 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 UBXN11Q5T124 520 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 TDRD10Q5VZ19 366 aaKnown RBP12.43□□□□□ -0.42
C9orf3-220ENST00000489318 E4F1Q66K89 784 aaPredicted RBP12.43□□□□□ -0.42
C9orf3-220ENST00000489318 TRAF7Q6Q0C0 670 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 CACNA2D4Q7Z3S7 1137 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 NT5DC4Q86YG4 428 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 TMTC1Q8IUR5 882 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 CD302Q8IX05 232 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 FAM126BQ8IXS8 530 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 THNSL1Q8IYQ7 743 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 TAS1R2Q8TE23 839 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 VTI1AQ96AJ9 217 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 POP1Q99575 1024 aaKnown RBP12.43□□□□□ -0.42
C9orf3-220ENST00000489318 RNF208Q9H0X6 261 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 AJAP1Q9UKB5 411 aaPredicted RBP12.43□□□□□ -0.42
C9orf3-220ENST00000489318 NOC2LQ9Y3T9 749 aaKnown RBP12.43□□□□□ -0.42
C9orf3-220ENST00000489318 FHOD1Q9Y613 1164 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 TRIP11Q15643 1979 aa12.43□□□□□ -0.42
C9orf3-220ENST00000489318 CD4P01730 458 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 CXCL8P10145 99 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 TNNI1P19237 187 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 MSNP26038 577 aaKnown RBP12.42□□□□□ -0.42
C9orf3-220ENST00000489318 THPOP40225 353 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 CTCFP49711 727 aaPredicted RBP12.42□□□□□ -0.42
C9orf3-220ENST00000489318 FBXO47Q5MNV8 452 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 C1orf53Q5VUE5 145 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 IQCEQ6IPM2 695 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 CYP26C1Q6V0L0 522 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 EFCAB13Q8IY85 973 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 TMEM192Q8IY95 271 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 USP38Q8NB14 1042 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 OR5B17Q8NGF7 314 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 CAGE1Q8TC20 777 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 SEMA4DQ92854 862 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 TRAIPQ9BWF2 469 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 GPR88Q9GZN0 384 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 RPF1Q9H9Y2 349 aaKnown RBP12.42□□□□□ -0.42
C9orf3-220ENST00000489318 PLEKHA5Q9HAU0 1116 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 ERVK-5Q9HDB9 667 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 CHST12Q9NRB3 414 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 RAB20Q9NX57 234 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 AIPL1Q9NZN9 384 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 PIN4Q9Y237 131 aaKnown RBP12.42□□□□□ -0.42
C9orf3-220ENST00000489318 NOD1Q9Y239 953 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 C2CD2Q9Y426 696 aa12.42□□□□□ -0.42
C9orf3-220ENST00000489318 F8VZ95 297 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 ZNF500O60304 480 aaPredicted RBP12.41□□□□□ -0.42
C9orf3-220ENST00000489318 RPS6KA5O75582 802 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 SGPL1O95470 568 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 VNN1O95497 513 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 NPTXRO95502 500 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 CTSHP09668 335 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 COL6A1P12109 1028 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 CAPN2P17655 700 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 PRKCIP41743 596 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 GCNT1Q02742 428 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 SLC10A6Q3KNW5 377 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 HGSNATQ68CP4 663 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 LMBRD2Q68DH5 695 aaPredicted RBP12.41□□□□□ -0.42
C9orf3-220ENST00000489318 PHLDB3Q6NSJ2 640 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 FAM43BQ6ZT52 329 aaPredicted RBP12.41□□□□□ -0.42
C9orf3-220ENST00000489318 RRAGAQ7L523 313 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 FMNL3Q8IVF7 1028 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 ANKLE1Q8NAG6 615 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 U2AF1L4Q8WU68 220 aaKnown RBP12.41□□□□□ -0.42
C9orf3-220ENST00000489318 SNX27Q96L92 541 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 FAM81BQ96LP2 452 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 TSPAN18Q96SJ8 248 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 CCDC94Q9BW85 323 aaPredicted RBP12.41□□□□□ -0.42
C9orf3-220ENST00000489318 EIF2AQ9BY44 585 aaKnown RBP12.41□□□□□ -0.42
C9orf3-220ENST00000489318 STK33Q9BYT3 514 aa12.41□□□□□ -0.42
C9orf3-220ENST00000489318 NLRC4Q9NPP4 1024 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms