RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 CCDC51Q96ER9 411 aa10.32□□□□□ -0.76
COL17A1-207ENST00000488320 SLKQ9H2G2 1235 aaPredicted RBP10.32□□□□□ -0.76
COL17A1-207ENST00000488320 ZNF334Q9HCZ1 680 aaPredicted RBP10.32□□□□□ -0.76
COL17A1-207ENST00000488320 CACNG4Q9UBN1 327 aa10.32□□□□□ -0.76
COL17A1-207ENST00000488320 NOTCH4Q99466 2003 aa10.32□□□□□ -0.76
COL17A1-207ENST00000488320 GREB1Q4ZG55 1949 aa10.32□□□□□ -0.76
COL17A1-207ENST00000488320 ESYT2A0FGR8 921 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 CASTOR2A6NHX0 329 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 INO80B-WBP1J3KQ70 363 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 ZNF263O14978 683 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 ADAM12O43184 909 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 TSPAN1O60635 241 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 DKC1O60832 514 aaKnown RBP eCLIP10.31□□□□□ -0.76
COL17A1-207ENST00000488320 PSMD10O75832 226 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 NPTXRO95502 500 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 LRG1P02750 347 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 CHRNB1P11230 501 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 CEBPBP17676 345 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 ELF1P32519 619 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 AKAP17AQ02040 695 aaKnown RBP10.31□□□□□ -0.76
COL17A1-207ENST00000488320 PCBP1Q15365 356 aaKnown RBP eCLIP10.31□□□□□ -0.76
COL17A1-207ENST00000488320 DIEXFQ68CQ4 756 aaKnown RBP10.31□□□□□ -0.76
COL17A1-207ENST00000488320 LRSAM1Q6UWE0 723 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 KDF1Q8NAX2 398 aaPredicted RBP10.31□□□□□ -0.76
COL17A1-207ENST00000488320 CSGALNACT1Q8TDX6 532 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 PAAF1Q9BRP4 392 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 LSM14BQ9BX40 385 aaKnown RBP10.31□□□□□ -0.76
COL17A1-207ENST00000488320 RXFP3Q9NSD7 469 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 BRPF3Q9ULD4 1205 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 LHX6Q9UPM6 363 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 SDK1Q7Z5N4 2213 aa10.31□□□□□ -0.76
COL17A1-207ENST00000488320 KLF18A0A0U1RQI7 1052 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 ZNF197O14709 1029 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 POU2F2P09086 479 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 PSMC3P17980 439 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 CDC27P30260 824 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 ADD1P35611 737 aaKnown RBP10.3□□□□□ -0.76
COL17A1-207ENST00000488320 QARSP47897 775 aaKnown RBP10.3□□□□□ -0.76
COL17A1-207ENST00000488320 NOVA1P51513 510 aaKnown RBP10.3□□□□□ -0.76
COL17A1-207ENST00000488320 KPNA1P52294 538 aaPredicted RBP10.3□□□□□ -0.76
COL17A1-207ENST00000488320 ELAVL2Q12926 359 aaKnown RBP10.3□□□□□ -0.76
COL17A1-207ENST00000488320 PTGDRQ13258 359 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 TUSC3Q13454 348 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 AAMPQ13685 434 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 RAB33AQ14088 237 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 GAS6Q14393 721 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 SLC5A9Q2M3M2 681 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 FAM78AQ5JUQ0 283 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 CREB3L3Q68CJ9 461 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 RNF43Q68DV7 783 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 RTL10Q7L3V2 364 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 CACNA2D4Q7Z3S7 1137 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 FERMT3Q86UX7 667 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 ZNF579Q8NAF0 562 aaKnown RBP10.3□□□□□ -0.76
COL17A1-207ENST00000488320 GSTCDQ8NEC7 633 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 FAM200AQ8TCP9 573 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 LOXL4Q96JB6 756 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 CORO1BQ9BR76 489 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 NXF3Q9H4D5 531 aaKnown RBP10.3□□□□□ -0.76
COL17A1-207ENST00000488320 RBM12Q9NTZ6 932 aaKnown RBP10.3□□□□□ -0.76
COL17A1-207ENST00000488320 CDY1Q9Y6F8 540 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 TICRRQ7Z2Z1 1910 aa10.3□□□□□ -0.76
COL17A1-207ENST00000488320 F5P12259 2224 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 CCDC196A0A1B0GTZ2 297 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 TMEM8BA6NDV4 472 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 SRRM3A6NNA2 597 aaPredicted RBP10.29□□□□□ -0.76
COL17A1-207ENST00000488320 K7ESF4 209 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 KIF4AO95239 1232 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 THP07101 528 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 CCDC192P0DO97 292 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 SPINK2P20155 84 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 RFC5P40937 340 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 FGD1P98174 961 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 TFDP1Q14186 410 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 Q4G0T1 1027 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 CYP4A22Q5TCH4 519 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 PDZD4Q76G19 769 aaPredicted RBP10.29□□□□□ -0.76
COL17A1-207ENST00000488320 OTUD6AQ7L8S5 288 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 WDR5BQ86VZ2 330 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 CDR2LQ86X02 465 aaPredicted RBP10.29□□□□□ -0.76
COL17A1-207ENST00000488320 YAF2Q8IY57 180 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 TBCKQ8TEA7 893 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 TCEAL4Q96EI5 215 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 TCEANC2Q96MN5 208 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 MTRQ99707 1265 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 SMOC1Q9H4F8 434 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 DHX33Q9H6R0 707 aaKnown RBP10.29□□□□□ -0.76
COL17A1-207ENST00000488320 TRPV5Q9NQA5 729 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 PPME1Q9Y570 386 aa10.29□□□□□ -0.76
COL17A1-207ENST00000488320 PDCD11Q14690 1871 aaKnown RBP10.28□□□□□ -0.76
COL17A1-207ENST00000488320 FRYQ5TBA9 3013 aa10.28□□□□□ -0.76
COL17A1-207ENST00000488320 PRRG1O14668 218 aa10.28□□□□□ -0.76
COL17A1-207ENST00000488320 EDIL3O43854 480 aa10.28□□□□□ -0.76
COL17A1-207ENST00000488320 RPP40O75818 363 aaKnown RBP10.28□□□□□ -0.76
COL17A1-207ENST00000488320 EPN2O95208 641 aa10.28□□□□□ -0.76
COL17A1-207ENST00000488320 ARF4P18085 180 aaPredicted RBP10.28□□□□□ -0.76
COL17A1-207ENST00000488320 FCARP24071 287 aa10.28□□□□□ -0.76
COL17A1-207ENST00000488320 NLRP5P59047 1200 aa10.28□□□□□ -0.76
COL17A1-207ENST00000488320 PTENP60484 403 aa10.28□□□□□ -0.76
COL17A1-207ENST00000488320 RING1Q06587 406 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms