RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 TAAR9Q96RI9 348 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 MAP3K14Q99558 947 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 KRTAP4-2Q9BYR5 136 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 CALCOCO1Q9P1Z2 691 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 SLC23A1Q9UHI7 598 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 ST6GALNAC2Q9UJ37 374 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 ACTL7AQ9Y615 435 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 AP1G1O43747 822 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 IPO13O94829 963 aaKnown RBP6.92□□□□□ -1.3
USP48-209ENST00000487880 RPLP2P05387 115 aaKnown RBP6.92□□□□□ -1.3
USP48-209ENST00000487880 SELENOPP49908 381 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 RABGGTBP53611 331 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 CTXN1P60606 82 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 TLE1Q04724 770 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 RAB39AQ14964 217 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 R3HDM1Q15032 1099 aaKnown RBP6.92□□□□□ -1.3
USP48-209ENST00000487880 FAM83AQ86UY5 434 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 XYLT1Q86Y38 959 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 DIS3LQ8TF46 1054 aaKnown RBP6.92□□□□□ -1.3
USP48-209ENST00000487880 FAM89AQ96GI7 184 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 TMX3Q96JJ7 454 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 CLPTM1LQ96KA5 538 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 LRGUKQ96M69 825 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 EPC1Q9H2F5 836 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 SMPD4Q9NXE4 827 aa6.92□□□□□ -1.3
USP48-209ENST00000487880 TBKBP1A7MCY6 615 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 CAPN14A8MX76 684 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 SLC16A6O15403 523 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 HHEXQ03014 270 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 PTH1RQ03431 593 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 MINDY4Q4G0A6 757 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 HS1BP3Q53T59 392 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 DCAF17Q5H9S7 520 aaPredicted RBP6.91□□□□□ -1.3
USP48-209ENST00000487880 DACT2Q5SW24 774 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 NAIF1Q69YI7 327 aaPredicted RBP6.91□□□□□ -1.3
USP48-209ENST00000487880 DRICH1Q6PGQ1 229 aaPredicted RBP6.91□□□□□ -1.3
USP48-209ENST00000487880 SEM1Q6ZVN7 128 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 RSPH3Q86UC2 560 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 PLXDC1Q8IUK5 500 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 GRAMD1CQ8IYS0 662 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 DCBLD1Q8N8Z6 715 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 C1GALT1C1Q96EU7 318 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 C8orf49Q96NF6 230 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 CPPED1Q9BRF8 314 aaPredicted RBP6.91□□□□□ -1.3
USP48-209ENST00000487880 MRI1Q9BV20 369 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 FAM30AQ9NZY2 134 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 PNPLA7Q6ZV29 1317 aa6.91□□□□□ -1.3
USP48-209ENST00000487880 KLRG2A4D1S0 409 aaPredicted RBP6.9□□□□□ -1.3
USP48-209ENST00000487880 MARCH6O60337 910 aa6.9□□□□□ -1.3
USP48-209ENST00000487880 MFAP3LO75121 409 aa6.9□□□□□ -1.3
USP48-209ENST00000487880 SNRPA1P09661 255 aaKnown RBP6.9□□□□□ -1.3
USP48-209ENST00000487880 THEMIS2Q5TEJ8 643 aa6.9□□□□□ -1.3
USP48-209ENST00000487880 SGMS1Q86VZ5 419 aa6.9□□□□□ -1.3
USP48-209ENST00000487880 TTC8Q8TAM2 541 aa6.9□□□□□ -1.3
USP48-209ENST00000487880 RGMAQ96B86 450 aa6.9□□□□□ -1.3
USP48-209ENST00000487880 C1QTNF3Q9BXJ4 246 aa6.9□□□□□ -1.3
USP48-209ENST00000487880 KLC2Q9H0B6 622 aa6.9□□□□□ -1.3
USP48-209ENST00000487880 LRRC14BA6NHZ5 514 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 H3BML4 177 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 CYP27B1O15528 508 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 ALDH2P05091 517 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 RAP2AP10114 183 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 ATP5JP18859 108 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 MAGEA10P43363 369 aaPredicted RBP6.89□□□□□ -1.31
USP48-209ENST00000487880 MAP2K6P52564 334 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 HK3P52790 923 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 CLRN1P58418 232 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 ZNF280AP59817 542 aaPredicted RBP6.89□□□□□ -1.31
USP48-209ENST00000487880 NOGQ13253 232 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 C14orf80Q86SX3 495 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 MB21D1Q8N884 522 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 C8orf48Q96LL4 319 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 ADOQ96SZ5 270 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 MYOCQ99972 504 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 CLCA2Q9UQC9 943 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 HDAC5Q9UQL6 1122 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 POLHQ9Y253 713 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 RUVBL1Q9Y265 456 aaKnown RBP6.89□□□□□ -1.31
USP48-209ENST00000487880 TCAF1Q9Y4C2 921 aa6.89□□□□□ -1.31
USP48-209ENST00000487880 KRTAP23-1A1A580 65 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 GOLGA6CA6NDK9 693 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 GOLGA6BA6NDN3 693 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 PRR5-ARHGAP8B1AHC4 643 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 ERC2O15083 957 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 GOLGA6DP0CG33 693 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 MALP21145 153 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 IL12RB1P42701 662 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 CDSNQ15517 529 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 VPS72Q15906 364 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 ZNF585AQ6P3V2 769 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 Q6ZRM9 215 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 C3orf20Q8ND61 904 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 CHST13Q8NET6 341 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 ACO2Q99798 780 aaKnown RBP6.88□□□□□ -1.31
USP48-209ENST00000487880 C11orf54Q9H0W9 315 aaPredicted RBP6.88□□□□□ -1.31
USP48-209ENST00000487880 DEF6Q9H4E7 631 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 KMT5AQ9NQR1 393 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 GOLGA6AQ9NYA3 693 aa6.88□□□□□ -1.31
USP48-209ENST00000487880 KRTAP9-7A8MTY7 169 aa6.87□□□□□ -1.31
USP48-209ENST00000487880 NT5C1B-RDH14C9J2C7 533 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms