RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 LZTS1Q9Y250 596 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 PDCD11Q14690 1871 aaKnown RBP16.12■□□□□ 0.17
USP4-212ENST00000486549 CARNS1A5YM72 827 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 CASTOR2A6NHX0 329 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 ANKRD63C9JTQ0 380 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 F8W810 466 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 NR1I2O75469 434 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 PRPF6O94906 941 aaKnown RBP16.12■□□□□ 0.17
USP4-212ENST00000486549 TUSC3Q13454 348 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 L1TD1Q5T7N2 865 aaKnown RBP16.12■□□□□ 0.17
USP4-212ENST00000486549 EP400NLQ6ZTU2 488 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 UNC13DQ70J99 1090 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 TMC7Q7Z402 723 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 ADGRD2Q7Z7M1 963 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 SYCP3Q8IZU3 236 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 GLIS3Q8NEA6 775 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 SNX27Q96L92 541 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 ACCSQ96QU6 501 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 IGFLR1Q9H665 355 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 UBE2ZQ9H832 354 aaPredicted RBP16.12■□□□□ 0.17
USP4-212ENST00000486549 MARCH5Q9NX47 278 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 CHMP5Q9NZZ3 219 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 USP25Q9UHP3 1055 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 PCDHB13Q9Y5F0 798 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 VCANP13611 3396 aa16.12■□□□□ 0.17
USP4-212ENST00000486549 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.11■□□□□ 0.17
USP4-212ENST00000486549 FAM237AA0A1B0GTK4 181 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 CXCL8P10145 99 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 GTF2F1P35269 517 aaKnown RBP eCLIP16.11■□□□□ 0.17
USP4-212ENST00000486549 TNFSF9P41273 254 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 ALCAMQ13740 583 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 LEXMQ3ZCV2 418 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 FAM26FQ5R3K3 315 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 ZBTB41Q5SVQ8 909 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 CNNM4Q6P4Q7 775 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 RBM23Q86U06 439 aaKnown RBP16.11■□□□□ 0.17
USP4-212ENST00000486549 VPS52Q8N1B4 723 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 STRA6Q9BX79 667 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 EXOC7Q9UPT5 735 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 BRWD1Q9NSI6 2320 aa16.11■□□□□ 0.17
USP4-212ENST00000486549 A0A0B4J269 797 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 FSD2A1L4K1 749 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 FSCN2O14926 492 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 OGTO15294 1046 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 NRIP1P48552 1158 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 KCNQ1P51787 676 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 HYAL1Q12794 435 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 KRBA2Q6ZNG9 492 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 STXBP4Q6ZWJ1 553 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 DDX53Q86TM3 631 aaKnown RBP16.1■□□□□ 0.17
USP4-212ENST00000486549 HASPINQ8TF76 798 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 AUTS2Q8WXX7 1259 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 PABPC5Q96DU9 382 aaKnown RBP16.1■□□□□ 0.17
USP4-212ENST00000486549 PPP1R10Q96QC0 940 aaKnown RBP16.1■□□□□ 0.17
USP4-212ENST00000486549 PAAF1Q9BRP4 392 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 COLEC11Q9BWP8 271 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 VN1R3Q9BXE9 311 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 GOLGA2P5Q9HBQ8 144 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 TTC28Q96AY4 2481 aa16.1■□□□□ 0.17
USP4-212ENST00000486549 SMIM28A0A1B0GU29 152 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 HIDE1A8MVS5 230 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 TULP1O00294 542 aaPredicted RBP16.09■□□□□ 0.17
USP4-212ENST00000486549 PER2O15055 1255 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 MEFVO15553 781 aaPredicted RBP16.09■□□□□ 0.17
USP4-212ENST00000486549 ZNF202O95125 648 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 CLTAP09496 248 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 PRR29P0C7W0 189 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 SPAG1Q07617 926 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 HSP90AA2PQ14568 343 aaPredicted RBP16.09■□□□□ 0.17
USP4-212ENST00000486549 SMC1AQ14683 1233 aaKnown RBP16.09■□□□□ 0.17
USP4-212ENST00000486549 NAB2Q15742 525 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 SLC10A6Q3KNW5 377 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 SLFN12LQ6IEE8 588 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 PDE12Q6L8Q7 609 aaKnown RBP16.09■□□□□ 0.17
USP4-212ENST00000486549 ALKAL1Q6UXT8 129 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 NOC3LQ8WTT2 800 aaKnown RBP16.09■□□□□ 0.17
USP4-212ENST00000486549 POMGNT1Q8WZA1 660 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 FAM212AQ96EL1 285 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 ZMAT2Q96NC0 199 aaKnown RBP16.09■□□□□ 0.17
USP4-212ENST00000486549 ZBP1Q9H171 429 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 TLE6Q9H808 572 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 SLC39A2Q9NP94 309 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 NGRNQ9NPE2 291 aaKnown RBP16.09■□□□□ 0.17
USP4-212ENST00000486549 EXOC1Q9NV70 894 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 CLDND1Q9NY35 253 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 CNTN3Q9P232 1028 aa16.09■□□□□ 0.17
USP4-212ENST00000486549 AGO2Q9UKV8 859 aaKnown RBP16.09■□□□□ 0.17
USP4-212ENST00000486549 ANK1P16157 1881 aa16.08■□□□□ 0.17
USP4-212ENST00000486549 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.08■□□□□ 0.16
USP4-212ENST00000486549 PVALEFA0A1B0GWK0 134 aa16.08■□□□□ 0.16
USP4-212ENST00000486549 FAM189A1O60320 539 aa16.08■□□□□ 0.16
USP4-212ENST00000486549 KIF4AO95239 1232 aa16.08■□□□□ 0.16
USP4-212ENST00000486549 CXCL14O95715 111 aa16.08■□□□□ 0.16
USP4-212ENST00000486549 KCNA5P22460 613 aa16.08■□□□□ 0.16
USP4-212ENST00000486549 ACOT2P49753 483 aa16.08■□□□□ 0.16
USP4-212ENST00000486549 PPP2R3AQ06190 1150 aa16.08■□□□□ 0.16
USP4-212ENST00000486549 SOX4Q06945 474 aaPredicted RBP16.08■□□□□ 0.16
USP4-212ENST00000486549 BMS1Q14692 1282 aaKnown RBP16.08■□□□□ 0.16
USP4-212ENST00000486549 KYAT1Q16773 422 aa16.08■□□□□ 0.16
USP4-212ENST00000486549 XKR4Q5GH76 650 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms