RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 RHOBTB3O94955 611 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 SMC2O95347 1197 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 THP07101 528 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 GALTP07902 379 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 ADSSP30520 456 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 ACOT2P49753 483 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 PPP2R3AQ06190 1150 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 DSC1Q08554 894 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 KCNB1Q14721 858 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 KYAT1Q16773 422 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 TMEM173Q86WV6 379 aaPredicted RBP12.91□□□□□ -0.34
HPS4-214ENST00000485842 COLGALT2Q8IYK4 626 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 SLC39A11Q8N1S5 342 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 ZNF507Q8TCN5 953 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 SMARCE1Q969G3 411 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 FAM212AQ96EL1 285 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 CBWD1Q9BRT8 395 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 TMEM175Q9BSA9 504 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 PCIF1Q9H4Z3 704 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 RPF1Q9H9Y2 349 aaKnown RBP12.91□□□□□ -0.34
HPS4-214ENST00000485842 CACNG4Q9UBN1 327 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 STYXL1Q9Y6J8 313 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 ATG2AQ2TAZ0 1938 aa12.91□□□□□ -0.34
HPS4-214ENST00000485842 SMIM28A0A1B0GU29 152 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 GOLGA8IPA6NC78 632 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 GOLGA8JA6NMD2 632 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 MEFVO15553 781 aaPredicted RBP12.9□□□□□ -0.34
HPS4-214ENST00000485842 FAM189A1O60320 539 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 GARTP22102 1010 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 SPAG1Q07617 926 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 TUSC3Q13454 348 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 ENOX2Q16206 610 aaKnown RBP12.9□□□□□ -0.34
HPS4-214ENST00000485842 PTPROQ16827 1216 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 BMT2Q1RMZ1 405 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 SLC10A6Q3KNW5 377 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 HS2ST1Q7LGA3 356 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 SMYD4Q8IYR2 804 aaPredicted RBP12.9□□□□□ -0.34
HPS4-214ENST00000485842 ZSWIM2Q8NEG5 633 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 SPPL3Q8TCT6 385 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 BCL7CQ8WUZ0 217 aaPredicted RBP12.9□□□□□ -0.34
HPS4-214ENST00000485842 POF1BQ8WVV4 589 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 RABGGTAQ92696 567 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 TMEM169Q96HH4 297 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 PPP1R10Q96QC0 940 aaKnown RBP12.9□□□□□ -0.34
HPS4-214ENST00000485842 FAM213AQ9BRX8 229 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 GOLGA2P5Q9HBQ8 144 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 AGPAT3Q9NRZ7 376 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 LMBRD1Q9NUN5 540 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 RMND1Q9NWS8 449 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 CNTN3Q9P232 1028 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 CPSF3Q9UKF6 684 aaKnown RBP12.9□□□□□ -0.34
HPS4-214ENST00000485842 MAPK8IP1Q9UQF2 711 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 FAN1Q9Y2M0 1017 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 PCDHA5Q9Y5H7 936 aa12.9□□□□□ -0.34
HPS4-214ENST00000485842 ANK1P16157 1881 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 CARNS1A5YM72 827 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 LACTBL1A8MY62 500 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 F8W810 466 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 NRP1O14786 923 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 CLIC2O15247 247 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 TGFB1I1O43294 461 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 KIF20AO95235 890 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 ALDH2P05091 517 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 DNAJB1P25685 340 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 CYP2J2P51589 502 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 KRT17Q04695 432 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 CAMK4Q16566 473 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 KNOP1Q1ED39 458 aaKnown RBP12.89□□□□□ -0.35
HPS4-214ENST00000485842 XKR4Q5GH76 650 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 ISM2Q6H9L7 571 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 ALKAL1Q6UXT8 129 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 PPM1EQ8WY54 764 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 MRPL38Q96DV4 380 aaKnown RBP12.89□□□□□ -0.35
HPS4-214ENST00000485842 KIF12Q96FN5 646 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 IGSF21Q96ID5 467 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 ZMAT2Q96NC0 199 aaKnown RBP12.89□□□□□ -0.35
HPS4-214ENST00000485842 GSDMAQ96QA5 445 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 LMAN2LQ9H0V9 348 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 SLC38A7Q9NVC3 462 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 MTCH2Q9Y6C9 303 aa12.89□□□□□ -0.35
HPS4-214ENST00000485842 PRRC2BQ5JSZ5 2229 aaKnown RBP12.88□□□□□ -0.35
HPS4-214ENST00000485842 SZT2Q5T011 3432 aa12.88□□□□□ -0.35
HPS4-214ENST00000485842 TTC26A0AVF1 554 aa12.88□□□□□ -0.35
HPS4-214ENST00000485842 BIN1O00499 593 aa12.88□□□□□ -0.35
HPS4-214ENST00000485842 EXTL3O43909 919 aa12.88□□□□□ -0.35
HPS4-214ENST00000485842 LDHAP00338 332 aaKnown RBP12.88□□□□□ -0.35
HPS4-214ENST00000485842 KCNE1P15382 129 aa12.88□□□□□ -0.35
HPS4-214ENST00000485842 CA8P35219 290 aa12.88□□□□□ -0.35
HPS4-214ENST00000485842 PLCB3Q01970 1234 aa12.88□□□□□ -0.35
HPS4-214ENST00000485842 SOX4Q06945 474 aaPredicted RBP12.88□□□□□ -0.35
HPS4-214ENST00000485842 HSP90AA2PQ14568 343 aaPredicted RBP12.88□□□□□ -0.35
HPS4-214ENST00000485842 NAB2Q15742 525 aa12.88□□□□□ -0.35
HPS4-214ENST00000485842 CCDC85BQ15834 202 aaPredicted RBP12.88□□□□□ -0.35
HPS4-214ENST00000485842 JADE1Q6IE81 842 aa12.88□□□□□ -0.35
HPS4-214ENST00000485842 CRELD2Q6UXH1 353 aaPredicted RBP12.88□□□□□ -0.35
HPS4-214ENST00000485842 ELOA2Q8IYF1 753 aaPredicted RBP12.88□□□□□ -0.35
HPS4-214ENST00000485842 GPD1LQ8N335 351 aa12.88□□□□□ -0.35
HPS4-214ENST00000485842 MAFAQ8NHW3 353 aaPredicted RBP12.88□□□□□ -0.35
HPS4-214ENST00000485842 MICAL1Q8TDZ2 1067 aa12.88□□□□□ -0.35
HPS4-214ENST00000485842 HASPINQ8TF76 798 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms