RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ANKRD63C9JTQ0 380 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 NRP1O14786 923 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 NR1I2O75469 434 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 GARTP22102 1010 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 CASP1P29466 404 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 KCNA1Q09470 495 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 SLC10A6Q3KNW5 377 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 KANK3Q6NY19 840 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 CLEC17AQ6ZS10 378 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 ZNF507Q8TCN5 953 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 MSTO1Q9BUK6 570 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 GBP3Q9H0R5 595 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 CXCL16Q9H2A7 254 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 NGRNQ9NPE2 291 aaKnown RBP17.34■□□□□ 0.37
UPF3A-208ENST00000484246 SLC38A7Q9NVC3 462 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 CPSF3Q9UKF6 684 aaKnown RBP17.34■□□□□ 0.37
UPF3A-208ENST00000484246 FAN1Q9Y2M0 1017 aa17.34■□□□□ 0.37
UPF3A-208ENST00000484246 SMIM28A0A1B0GU29 152 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 TTC26A0AVF1 554 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 FSD2A1L4K1 749 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 TMEM189-UBE2V1I3L0A0 370 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 KIAA0391O15091 583 aaKnown RBP17.33■□□□□ 0.36
UPF3A-208ENST00000484246 HARSP12081 509 aaKnown RBP17.33■□□□□ 0.36
UPF3A-208ENST00000484246 ADSSP30520 456 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 IRS1P35568 1242 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 SNRPFP62306 86 aaKnown RBP17.33■□□□□ 0.36
UPF3A-208ENST00000484246 DPYDQ12882 1025 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 PSMD2Q13200 908 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 SNW1Q13573 536 aaKnown RBP17.33■□□□□ 0.36
UPF3A-208ENST00000484246 TCEAL5Q5H9L2 206 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 ELOA2Q8IYF1 753 aaPredicted RBP17.33■□□□□ 0.36
UPF3A-208ENST00000484246 GPR65Q8IYL9 337 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 GLIS3Q8NEA6 775 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 SCFD1Q8WVM8 642 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 HPS3Q969F9 1004 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 PPP2R3CQ969Q6 453 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 TIGD1Q96MW7 591 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 UROC1Q96N76 676 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 VN1R3Q9BXE9 311 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 ZBP1Q9H171 429 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 TSHZ2Q9NRE2 1034 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 IRAK3Q9Y616 596 aa17.33■□□□□ 0.36
UPF3A-208ENST00000484246 TISP43B9A030 160 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 NT5C1B-RDH14C9J2C7 533 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 NCK2O43639 380 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 PRPF6O94906 941 aaKnown RBP17.32■□□□□ 0.36
UPF3A-208ENST00000484246 CXCL8P10145 99 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 CTSAP10619 480 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 HOXD13P35453 343 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 ERVFC1P60507 584 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 OSTNP61366 133 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 HSP90AA2PQ14568 343 aaPredicted RBP17.32■□□□□ 0.36
UPF3A-208ENST00000484246 ENOX2Q16206 610 aaKnown RBP17.32■□□□□ 0.36
UPF3A-208ENST00000484246 CD302Q8IX05 232 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 ZMAT2Q96NC0 199 aaKnown RBP17.32■□□□□ 0.36
UPF3A-208ENST00000484246 IPO9Q96P70 1041 aaKnown RBP17.32■□□□□ 0.36
UPF3A-208ENST00000484246 CDCA3Q99618 268 aaPredicted RBP17.32■□□□□ 0.36
UPF3A-208ENST00000484246 TCF25Q9BQ70 676 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 HERC2P3Q9BVR0 1158 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 COLEC11Q9BWP8 271 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 EXOC1Q9NV70 894 aa17.32■□□□□ 0.36
UPF3A-208ENST00000484246 AGO2Q9UKV8 859 aaKnown RBP17.32■□□□□ 0.36
UPF3A-208ENST00000484246 PRG3Q9Y2Y8 225 aaPredicted RBP17.32■□□□□ 0.36
UPF3A-208ENST00000484246 RHOBTB3O94955 611 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 PRR29P0C7W0 189 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 MATR3P43243 847 aaKnown RBP eCLIP17.31■□□□□ 0.36
UPF3A-208ENST00000484246 OR1G1P47890 313 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 SMC1AQ14683 1233 aaKnown RBP17.31■□□□□ 0.36
UPF3A-208ENST00000484246 KCNB1Q14721 858 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 CTC1Q2NKJ3 1217 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 KMT5BQ4FZB7 885 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 GLRA4Q5JXX5 417 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 ZBTB41Q5SVQ8 909 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 SYCP3Q8IZU3 236 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 MICALL1Q8N3F8 863 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 POMGNT1Q8WZA1 660 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 IKZF4Q9H2S9 585 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 CGNQ9P2M7 1197 aaKnown RBP17.31■□□□□ 0.36
UPF3A-208ENST00000484246 COG5Q9UP83 839 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 MYH11P35749 1972 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 UNC80Q8N2C7 3258 aa17.31■□□□□ 0.36
UPF3A-208ENST00000484246 SOD2P04179 222 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 RPN1P04843 607 aaKnown RBP17.3■□□□□ 0.36
UPF3A-208ENST00000484246 CYP3A5P20815 502 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 TNFSF9P41273 254 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 PPP2R3AQ06190 1150 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 HYAL1Q12794 435 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 BMS1Q14692 1282 aaKnown RBP17.3■□□□□ 0.36
UPF3A-208ENST00000484246 CCDC85BQ15834 202 aaPredicted RBP17.3■□□□□ 0.36
UPF3A-208ENST00000484246 ZBTB6Q15916 424 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 SEZ6Q53EL9 994 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 CRELD2Q6UXH1 353 aaPredicted RBP17.3■□□□□ 0.36
UPF3A-208ENST00000484246 C12orf56Q8IXR9 622 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 VPS52Q8N1B4 723 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 MRPL43Q8N983 215 aaKnown RBP17.3■□□□□ 0.36
UPF3A-208ENST00000484246 KIAA0895Q8NCT3 520 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 TMEM174Q8WUU8 243 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 DDX27Q96GQ7 796 aaKnown RBP17.3■□□□□ 0.36
UPF3A-208ENST00000484246 ASB7Q9H672 318 aa17.3■□□□□ 0.36
UPF3A-208ENST00000484246 RPF1Q9H9Y2 349 aaKnown RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms