RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	SENP6	Q9GZR1	1112 aa	Predicted RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	RPF1	Q9H9Y2	349 aa	Known RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	12.14	□□□□□ -0.47	2e-7	■■■■■ 86.5
APTX-223	ENST00000479656	PIN4	Q9Y237	131 aa	Known RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	FHOD1	Q9Y613	1164 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	FRMPD3	Q5JV73	1810 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	LRRC53	A6NM62	1247 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	RPS6KA5	O75582	802 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	RPLP2	P05387	115 aa	Known RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	CLTA	P09496	248 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	CXCL8	P10145	99 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	AXL	P30530	894 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	BRCA2	P51587	3418 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	TRIM71	Q2Q1W2	868 aa	Known RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	PHLDB3	Q6NSJ2	640 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	SLC27A1	Q6PCB7	646 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	WDR59	Q6PJI9	974 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	C15orf39	Q6ZRI6	1047 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	GPIHBP1	Q8IV16	184 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	C17orf53	Q8N3J3	647 aa	Predicted RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	OR5B17	Q8NGF7	314 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	TAS1R2	Q8TE23	839 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	CHP1	Q99653	195 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	CGRRF1	Q99675	332 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	RAB20	Q9NX57	234 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	AJAP1	Q9UKB5	411 aa	Predicted RBP	12.14	□□□□□ -0.47
APTX-223	ENST00000479656	COQ4	Q9Y3A0	265 aa		12.14	□□□□□ -0.47
APTX-223	ENST00000479656	SOWAHD	A6NJG2	315 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	LACTBL1	A8MY62	500 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	MEFV	O15553	781 aa	Predicted RBP	12.13	□□□□□ -0.47
APTX-223	ENST00000479656	TFRC	P02786	760 aa	Known RBP	12.13	□□□□□ -0.47
APTX-223	ENST00000479656	HSPA1A	P0DMV8	641 aa	Known RBP	12.13	□□□□□ -0.47
APTX-223	ENST00000479656	HSPA1B	P0DMV9	641 aa	Known RBP	12.13	□□□□□ -0.47
APTX-223	ENST00000479656	CDK7	P50613	346 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	NFX1	Q12986	1120 aa	Known RBP	12.13	□□□□□ -0.47
APTX-223	ENST00000479656	SURF1	Q15526	300 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	DCAF4L1	Q3SXM0	396 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	TDRD10	Q5VZ19	366 aa	Known RBP	12.13	□□□□□ -0.47
APTX-223	ENST00000479656	IQCE	Q6IPM2	695 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	PDXDC1	Q6P996	788 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	FBXL13	Q8NEE6	735 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	KIAA1524	Q8TCG1	905 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	ELMO3	Q96BJ8	720 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	ZNF333	Q96JL9	665 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	ACAP3	Q96P50	834 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	DNAJC12	Q9UKB3	198 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	ST3GAL5	Q9UNP4	418 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	DNAH12	Q6ZR08	3092 aa		12.13	□□□□□ -0.47
APTX-223	ENST00000479656	SGPL1	O95470	568 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	FECH	P22830	423 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	GRM5	P41594	1212 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	CTCF	P49711	727 aa	Predicted RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	BIRC3	Q13489	604 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	RAPGEF1	Q13905	1077 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	MTF1	Q14872	753 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	KYAT1	Q16773	422 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	SLC10A6	Q3KNW5	377 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	ZACN	Q401N2	412 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	ZNF618	Q5T7W0	954 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	E4F1	Q66K89	784 aa	Predicted RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	SCARA3	Q6AZY7	606 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	WDR49	Q8IV35	697 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	ARHGEF19	Q8IW93	802 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	U2AF1L4	Q8WU68	220 aa	Known RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	NAA15	Q9BXJ9	866 aa	Known RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	AGO3	Q9H9G7	860 aa	Known RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	ZNHIT6	Q9NWK9	470 aa	Known RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	SNTG2	Q9NY99	539 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	APEX2	Q9UBZ4	518 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	FBXL5	Q9UKA1	691 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	PLAGL2	Q9UPG8	496 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	HES2	Q9Y543	173 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	ARHGAP6	O43182	974 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	PHACTR2	O75167	634 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	IL18RAP	O95256	599 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	VNN1	O95497	513 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	CST3	P01034	146 aa	Predicted RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	CKB	P12277	381 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	HNRNPH3	P31942	346 aa	Known RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	TFAM	Q00059	246 aa	Known RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	DUOXA2	Q1HG44	320 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	FAM26D	Q5JW98	314 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	FBXO47	Q5MNV8	452 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	UBXN11	Q5T124	520 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	SFMBT2	Q5VUG0	894 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	CYP26C1	Q6V0L0	522 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	RAD9B	Q6WBX8	426 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	TMTC1	Q8IUR5	882 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	EFCAB13	Q8IY85	973 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	SPAG5	Q96R06	1193 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	PI4K2A	Q9BTU6	479 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	CCDC94	Q9BW85	323 aa	Predicted RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	TRIM6	Q9C030	488 aa	Predicted RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	CRISPLD2	Q9H0B8	497 aa		12.12	□□□□□ -0.47
APTX-223	ENST00000479656	UBE2T	Q9NPD8	197 aa	Predicted RBP	12.12	□□□□□ -0.47
APTX-223	ENST00000479656	MROH7	Q68CQ1	1323 aa		12.11	□□□□□ -0.47
APTX-223	ENST00000479656	GPR182	O15218	404 aa		12.11	□□□□□ -0.47
APTX-223	ENST00000479656	HLA-DRA	P01903	254 aa		12.11	□□□□□ -0.47
APTX-223	ENST00000479656	GHR	P10912	638 aa		12.11	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms