RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PAPOLBQ9NRJ5 636 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SHOC2Q9UQ13 582 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ALG6Q9Y672 507 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 NUMBLQ9Y6R0 609 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 COL14A1Q05707 1796 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 STRCQ7RTU9 1775 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ZNF487B1APH4 448 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 PPP1R11O60927 126 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 GSRP00390 522 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 RPL21P46778 160 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 CBX2Q14781 532 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 CHRNA2Q15822 529 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 FXNQ16595 210 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SV2BQ7L1I2 683 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SAMD3Q8N6K7 520 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 MAGEB6Q8N7X4 407 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ARHGEF2Q92974 986 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 HERPUD2Q9BSE4 406 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ASCC2Q9H1I8 757 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ZBTB21Q9ULJ3 1066 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 RTCBQ9Y3I0 505 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 L3MBTL1Q9Y468 752 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 A0A0B4J269 797 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 TTI1O43156 1089 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 LMNAP02545 664 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 C8BP07358 591 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ACADVLP49748 655 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 CHRNDQ07001 517 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 TUBB3Q13509 450 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 NAA25Q14CX7 972 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 GLIS3Q8NEA6 775 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 TBC1D31Q96DN5 1066 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 TTC25Q96NG3 672 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SMC6Q96SB8 1091 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ZKSCAN3Q9BRR0 538 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 INO80BQ9C086 356 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ZNF287Q9HBT7 754 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 AMACRQ9UHK6 382 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 CCDC194A0A1B0GVG4 234 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SPDYE2BA6NHP3 402 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SUN1O94901 812 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 TFAP2AP05549 437 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SPDYE6P0CI01 402 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 FDX1P10109 184 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 PAPOLAP51003 745 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 CNTN2Q02246 1040 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 KLHL30Q0D2K2 578 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SPDYE2Q495Y8 402 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 ZNF804AQ7Z570 1209 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 SGF29Q96ES7 293 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 IFT74Q96LB3 600 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 NYAP2Q9P242 653 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 STOML1Q9UBI4 398 aa5.72□□□□□ -1.49
SYNE1-220ENST00000471834 XIRP1Q702N8 1843 aaKnown RBP5.72□□□□□ -1.49
SYNE1-220ENST00000471834 MYH3P11055 1940 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 KIF13BQ9NQT8 1826 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 PHLPP1O60346 1717 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 SMIM23A6NLE4 172 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 A8MXQ7 604 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 POLGP54098 1239 aaPredicted RBP5.71□□□□□ -1.49
SYNE1-220ENST00000471834 SLC29A2Q14542 456 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 CCNG2Q16589 344 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 KRT71Q3SY84 523 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 COLGALT2Q8IYK4 626 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 DCPSQ96C86 337 aaKnown RBP5.71□□□□□ -1.49
SYNE1-220ENST00000471834 RMDN2Q96LZ7 410 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 TAOK3Q9H2K8 898 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 SF3B1O75533 1304 aaKnown RBP eCLIP5.71□□□□□ -1.49
SYNE1-220ENST00000471834 GPR25O00155 361 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 UNGP13051 313 aaPredicted RBP5.71□□□□□ -1.49
SYNE1-220ENST00000471834 MCM7P33993 719 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 CPOXP36551 454 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 SLC12A3P55017 1021 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 RASSF7Q02833 373 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 SNAPC2Q13487 334 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 ASPRV1Q53RT3 343 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 PPP1R2P3Q6NXS1 205 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 RNF111Q6ZNA4 994 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 Q6ZNX1 250 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 KBTBD2Q8IY47 623 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 DAW1Q8N136 415 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 ZNF75CPQ92670 426 aaPredicted RBP5.71□□□□□ -1.49
SYNE1-220ENST00000471834 PPP2R3CQ969Q6 453 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 FAM124BQ9H5Z6 455 aaPredicted RBP5.71□□□□□ -1.49
SYNE1-220ENST00000471834 SNCAIPQ9Y6H5 919 aa5.71□□□□□ -1.49
SYNE1-220ENST00000471834 NUP98P52948 1817 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 KANSL1LA0AUZ9 987 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 SREBF1P36956 1147 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 NOP14P78316 857 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 FRG1Q14331 258 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 LIN52Q52LA3 116 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 KCTD16Q68DU8 428 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 PLEKHA7Q6IQ23 1121 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 MIGA2Q7L4E1 593 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 REXO1Q8N1G1 1221 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 RBM15BQ8NDT2 890 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 RBM41Q96IZ5 413 aaKnown RBP5.71□□□□□ -1.5
SYNE1-220ENST00000471834 MCMBPQ9BTE3 642 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 TUBB6Q9BUF5 446 aa5.71□□□□□ -1.5
SYNE1-220ENST00000471834 KCNQ5Q9NR82 932 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms