RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 GTPBP4Q9BZE4 634 aaKnown RBP13.02□□□□□ -0.33
VPS13D-204ENST00000469054 CLSTN2Q9H4D0 955 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 PRDM12Q9H4Q4 367 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 PCIF1Q9H4Z3 704 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 AGPAT3Q9NRZ7 376 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 MTMR10Q9NXD2 777 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 CNTN3Q9P232 1028 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 MAN1B1Q9UKM7 699 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 PLAGL2Q9UPG8 496 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 MAPK8IP1Q9UQF2 711 aa13.02□□□□□ -0.33
VPS13D-204ENST00000469054 MYH11P35749 1972 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 TTC26A0AVF1 554 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 H3BNC9 293 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 RFXAPO00287 272 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 CLIC2O15247 247 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 EXTL3O43909 919 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 B4GALT3O60512 393 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 ADRB2P07550 413 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 KCNE1P15382 129 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 MCM4P33991 863 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 GPM6BQ13491 265 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 ENOX2Q16206 610 aaKnown RBP13.01□□□□□ -0.33
VPS13D-204ENST00000469054 COBLL1Q53SF7 1204 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 GLRA4Q5JXX5 417 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 CRELD2Q6UXH1 353 aaPredicted RBP13.01□□□□□ -0.33
VPS13D-204ENST00000469054 C12orf56Q8IXR9 622 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 SMYD4Q8IYR2 804 aaPredicted RBP13.01□□□□□ -0.33
VPS13D-204ENST00000469054 GPD1LQ8N335 351 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 KLHL23Q8NBE8 558 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 ZSWIM2Q8NEG5 633 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 GOLGA5Q8TBA6 731 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 P2RX5Q93086 422 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 SAAL1Q96ER3 474 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 ZMAT2Q96NC0 199 aaKnown RBP13.01□□□□□ -0.33
VPS13D-204ENST00000469054 PPP1R10Q96QC0 940 aaKnown RBP13.01□□□□□ -0.33
VPS13D-204ENST00000469054 FAM213AQ9BRX8 229 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 TMEM175Q9BSA9 504 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 NUP62CLQ9H1M0 184 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 KCTD10Q9H3F6 313 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 HSPBP1Q9NZL4 362 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 KIAA1468Q9P260 1216 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 DNAJB4Q9UDY4 337 aa13.01□□□□□ -0.33
VPS13D-204ENST00000469054 GOLGA8IPA6NC78 632 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 GOLGA8JA6NMD2 632 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 LACTBL1A8MY62 500 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 NT5C1B-RDH14C9J2C7 533 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 PDXKO00764 312 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 LPXNO60711 386 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 FGF18O76093 207 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 MBD3O95983 291 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 PPM1AP35813 382 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 PBX3P40426 434 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 PRCPP42785 496 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 SLC11A1P49279 550 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 PPP2R3AQ06190 1150 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 TUSC3Q13454 348 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 NAB2Q15742 525 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 ISM2Q6H9L7 571 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 CD302Q8IX05 232 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 SLC39A11Q8N1S5 342 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 FAM212AQ96EL1 285 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 FBXL18Q96ME1 805 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 GUCD1Q96NT3 240 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 TSPAN18Q96SJ8 248 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 CDX2Q99626 313 aaPredicted RBP13□□□□□ -0.33
VPS13D-204ENST00000469054 KIAA1586Q9HCI6 787 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 SLC38A7Q9NVC3 462 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 SPG21Q9NZD8 308 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 FAN1Q9Y2M0 1017 aa13□□□□□ -0.33
VPS13D-204ENST00000469054 BIN1O00499 593 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 NRP1O14786 923 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 CALUO43852 315 aaPredicted RBP12.99□□□□□ -0.33
VPS13D-204ENST00000469054 ITGB1P05556 798 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 OR1G1P47890 313 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 PLCB3Q01970 1234 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 MORC3Q14149 939 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 TMEM173Q86WV6 379 aaPredicted RBP12.99□□□□□ -0.33
VPS13D-204ENST00000469054 TRIML1Q8N9V2 468 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 XXYLT1Q8NBI6 393 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 SPPL3Q8TCT6 385 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 GDPD5Q8WTR4 605 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 NOC3LQ8WTT2 800 aaKnown RBP12.99□□□□□ -0.33
VPS13D-204ENST00000469054 TMEM174Q8WUU8 243 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 TMEM169Q96HH4 297 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 IGSF21Q96ID5 467 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 GAS2L1Q99501 681 aaPredicted RBP12.99□□□□□ -0.33
VPS13D-204ENST00000469054 ASB7Q9H672 318 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 ALG13Q9NP73 1137 aaKnown RBP12.99□□□□□ -0.33
VPS13D-204ENST00000469054 DMAC2Q9NW81 257 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 TRAF3IP3Q9Y228 551 aa12.99□□□□□ -0.33
VPS13D-204ENST00000469054 PRG3Q9Y2Y8 225 aaPredicted RBP12.99□□□□□ -0.33
VPS13D-204ENST00000469054 CASTOR2A6NHX0 329 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 ZNF233A6NK53 670 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 GRM6O15303 877 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 EXOC3O60645 756 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 IL18RAPO95256 599 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 CYP3A5P20815 502 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 BMP6P22004 513 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 PPP1R2P41236 205 aa12.98□□□□□ -0.33
VPS13D-204ENST00000469054 CYP2J2P51589 502 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms