RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 NRP1O14786 923 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 B4GALT3O60512 393 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 ALDH2P05091 517 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 HARSP12081 509 aaKnown RBP12.94□□□□□ -0.34
VPS52-213ENST00000461743 GARTP22102 1010 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 DNAJB1P25685 340 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 PBX3P40426 434 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 SNRPFP62306 86 aaKnown RBP12.94□□□□□ -0.34
VPS52-213ENST00000461743 PPP2R3AQ06190 1150 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 HSP90AA2PQ14568 343 aaPredicted RBP12.94□□□□□ -0.34
VPS52-213ENST00000461743 SMC1AQ14683 1233 aaKnown RBP12.94□□□□□ -0.34
VPS52-213ENST00000461743 NAB2Q15742 525 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 BMT2Q1RMZ1 405 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 ZC2HC1CQ53FD0 456 aaPredicted RBP12.94□□□□□ -0.34
VPS52-213ENST00000461743 ZBTB33Q86T24 672 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 CD302Q8IX05 232 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 GPR65Q8IYL9 337 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 CCDC47Q96A33 483 aaKnown RBP12.94□□□□□ -0.34
VPS52-213ENST00000461743 PAGE5Q96GU1 130 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 ZBTB45Q96K62 511 aaPredicted RBP12.94□□□□□ -0.34
VPS52-213ENST00000461743 COLEC11Q9BWP8 271 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 ZBP1Q9H171 429 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 ENTPD7Q9NQZ7 604 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 MARCH5Q9NX47 278 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 MIOSQ9NXC5 875 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 KLK14Q9P0G3 267 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 IRAK3Q9Y616 596 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 SCN1AP35498 2009 aa12.94□□□□□ -0.34
VPS52-213ENST00000461743 DENND4AQ7Z401 1863 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 XPOTO43592 962 aaKnown RBP12.93□□□□□ -0.34
VPS52-213ENST00000461743 SOD2P04179 222 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 ADRB2P07550 413 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 MYBP10242 640 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 CTSAP10619 480 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 AFMP43652 599 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 OR1G1P47890 313 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 CASP5P51878 434 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 FAM160A1Q05DH4 1040 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 PSMD2Q13200 908 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 CUL4BQ13620 913 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 TCEAL5Q5H9L2 206 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 KRBA2Q6ZNG9 492 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 EPM2AIP1Q7L775 607 aaPredicted RBP12.93□□□□□ -0.34
VPS52-213ENST00000461743 TMEM173Q86WV6 379 aaPredicted RBP12.93□□□□□ -0.34
VPS52-213ENST00000461743 RNF168Q8IYW5 571 aaPredicted RBP12.93□□□□□ -0.34
VPS52-213ENST00000461743 TCF25Q9BQ70 676 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 HERC2P3Q9BVR0 1158 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 HAPLN2Q9GZV7 340 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 GOLPH3LQ9H4A5 285 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 EXOC1Q9NV70 894 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 TBC1D7Q9P0N9 293 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 CGNQ9P2M7 1197 aaKnown RBP12.93□□□□□ -0.34
VPS52-213ENST00000461743 ADAM28Q9UKQ2 775 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 SSX2IPQ9Y2D8 614 aa12.93□□□□□ -0.34
VPS52-213ENST00000461743 SF3B1O75533 1304 aaKnown RBP eCLIP12.92□□□□□ -0.34
VPS52-213ENST00000461743 SMIM28A0A1B0GU29 152 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 TTC26A0AVF1 554 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 KLRC4O43908 158 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 ZNF202O95125 648 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 EFEMP2O95967 443 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 LDHAP00338 332 aaKnown RBP12.92□□□□□ -0.34
VPS52-213ENST00000461743 SRGAP2BP0DMP2 458 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 CXCL8P10145 99 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 CREMQ03060 361 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 ELAVL2Q12926 359 aaKnown RBP12.92□□□□□ -0.34
VPS52-213ENST00000461743 AAK1Q2M2I8 961 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 TMC7Q7Z402 723 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 NT5DC4Q86YG4 428 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 SYCP3Q8IZU3 236 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 FMR1NBQ8N0W7 255 aaPredicted RBP12.92□□□□□ -0.34
VPS52-213ENST00000461743 VPS52Q8N1B4 723 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 GOLGA5Q8TBA6 731 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 BCL7CQ8WUZ0 217 aaPredicted RBP12.92□□□□□ -0.34
VPS52-213ENST00000461743 POMGNT1Q8WZA1 660 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 PABPC5Q96DU9 382 aaKnown RBP12.92□□□□□ -0.34
VPS52-213ENST00000461743 DDX27Q96GQ7 796 aaKnown RBP12.92□□□□□ -0.34
VPS52-213ENST00000461743 TIGD1Q96MW7 591 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 BLZF1Q9H2G9 400 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 RPF1Q9H9Y2 349 aaKnown RBP12.92□□□□□ -0.34
VPS52-213ENST00000461743 HOOK1Q9UJC3 728 aaKnown RBP12.92□□□□□ -0.34
VPS52-213ENST00000461743 CPSF3Q9UKF6 684 aaKnown RBP12.92□□□□□ -0.34
VPS52-213ENST00000461743 AGO2Q9UKV8 859 aaKnown RBP12.92□□□□□ -0.34
VPS52-213ENST00000461743 PRG3Q9Y2Y8 225 aaPredicted RBP12.92□□□□□ -0.34
VPS52-213ENST00000461743 DERAQ9Y315 318 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 C2orf16Q68DN1 1984 aa12.92□□□□□ -0.34
VPS52-213ENST00000461743 NT5C1B-RDH14C9J2C7 533 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 ANKRD63C9JTQ0 380 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 KIF20AO95235 890 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 IL18RAPO95256 599 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 URODP06132 367 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 CYP3A5P20815 502 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 RPL9P32969 192 aaKnown RBP12.91□□□□□ -0.34
VPS52-213ENST00000461743 IRS1P35568 1242 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 ERVFC1P60507 584 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 OSTNP61366 133 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 DPYDQ12882 1025 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 KCNB1Q14721 858 aa12.91□□□□□ -0.34
VPS52-213ENST00000461743 SKIV2LQ15477 1246 aaKnown RBP12.91□□□□□ -0.34
VPS52-213ENST00000461743 CCDC85BQ15834 202 aaPredicted RBP12.91□□□□□ -0.34
VPS52-213ENST00000461743 ENOX2Q16206 610 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms