RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 SMAD2Q15796 467 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ZC2HC1CQ53FD0 456 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 NAALADL2Q58DX5 795 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 PITRM1Q5JRX3 1037 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 FAM160B2Q86V87 743 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 SYT12Q8IV01 421 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 NDUFAF2Q8N183 169 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 WDR36Q8NI36 951 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC110Q8TBZ0 833 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ZNF418Q8TF45 676 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ECHDC3Q96DC8 303 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ERLEC1Q96DZ1 483 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ZMYND19Q96E35 227 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 LOXL4Q96JB6 756 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 CGRRF1Q99675 332 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 THUMPD2Q9BTF0 503 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 IER2Q9BTL4 223 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 CALN1Q9BXU9 219 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC12A5Q9H2X9 1139 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ERVK-5Q9HDB9 667 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC2A4RGQ9NR83 387 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 NENFQ9UMX5 172 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 RIPK3Q9Y572 518 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ANKRD17O75179 2603 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ESPL1Q14674 2120 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 PFASO15067 1338 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 DAPK1P53355 1430 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 A6NL46 340 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 DFNA5O60443 496 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 GNAI2P04899 355 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 C7P10643 843 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ITGA4P13612 1032 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 PTPN2P17706 415 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ITGA6P23229 1130 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 NBL1P41271 181 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 GLUD2P49448 558 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 BCAT1P54687 386 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 DMPKQ09013 629 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 VEZF1Q14119 521 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 HSP90AA2PQ14568 343 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 CYP2A13Q16696 494 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 KIAA0753Q2KHM9 967 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ITPRIPL2Q3MIP1 535 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 CHRFAM7AQ494W8 412 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 CCDC178Q5BJE1 867 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 KHDC1LQ5JSQ8 128 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 DLK2Q6UY11 383 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 APPL2Q8NEU8 664 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 NSMCE1Q8WV22 266 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 STAMBPL1Q96FJ0 436 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 PRMT6Q96LA8 375 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 JMJD8Q96S16 334 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 SHARPINQ9H0F6 387 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 KCNK12Q9HB15 430 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 TM7SF3Q9NS93 570 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 DEC1Q9P2X7 70 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 SERPINB13Q9UIV8 391 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 SERPINA10Q9UK55 444 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 OGDHLQ9ULD0 1010 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 DISP1Q96F81 1524 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 UGGT2Q9NYU1 1516 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 LRP6O75581 1613 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 BCL9LQ86UU0 1499 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 GOLGB1Q14789 3259 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 PES1O00541 588 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 PRRG2O14669 202 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 NDUFB5O43674 189 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 MAN1A2O60476 641 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 FGF19O95750 216 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ZNF75DP51815 510 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 CDC16Q13042 620 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 GSE1Q14687 1217 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 SKIDA1Q1XH10 827 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 DEFB109BQ30KR1 87 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 TMTC4Q5T4D3 741 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC30A9Q6PML9 568 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 CREBRFQ8IUR6 639 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ZNF654Q8IZM8 581 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 DDX51Q8N8A6 666 aaKnown RBP eCLIP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 KLHL23Q8NBE8 558 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 NSUN6Q8TEA1 469 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 DEPDC1BQ8WUY9 529 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ZNF592Q92610 1267 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 DTNBP1Q96EV8 351 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 LRFN5Q96NI6 719 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 HHIPQ96QV1 700 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 EDEM3Q9BZQ6 932 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 MCCC2Q9HCC0 563 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 PXMP2Q9NR77 195 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 SLC12A6Q9UHW9 1150 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 MAN2B2Q9Y2E5 1009 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 VWDEQ8N2E2 1590 aa2.99□□□□□ -1.93
CCDC88A-205ENST00000426576 ASXL1Q8IXJ9 1541 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 ARHGEF40Q8TER5 1519 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 GPATCH8Q9UKJ3 1502 aaKnown RBP2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 FAM149AA5PLN7 773 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 DDAH1O94760 285 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SUN1O94901 812 aa2.98□□□□□ -1.93
CCDC88A-205ENST00000426576 SLU7O95391 586 aaKnown RBP2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms