RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 PRSS55Q6UWB4 352 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 GLYCTKQ8IVS8 523 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 KCTD17Q8N5Z5 321 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 UROC1Q96N76 676 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 RUSC1Q9BVN2 902 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 MRPL4Q9BYD3 311 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 PRKD2Q9BZL6 878 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 NT5C3AQ9H0P0 336 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 TMEM134Q9H6X4 195 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 C17orf75Q9HAS0 396 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 UPF2Q9HAU5 1272 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 KCNK12Q9HB15 430 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 PIDD1Q9HB75 910 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 TOPORSQ9NS56 1045 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 ARHGAP28Q9P2N2 729 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 USP20Q9Y2K6 914 aa12.7□□□□□ -0.38
SQSTM1-203ENST00000422245 DOCK8Q8NF50 2099 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 PP2D1A8MPX8 630 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 E9PMD0 336 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 GALR2O43603 387 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 N4BP1O75113 896 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 ZMYND10O75800 440 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 HNRNPA1P09651 372 aaKnown RBP eCLIP12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 SPATA31D3P0C874 917 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 GRM5P41594 1212 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 YARSP54577 528 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 PEX3P56589 373 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 ATP2C1P98194 919 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 GLRA4Q5JXX5 417 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 MCTP1Q6DN14 999 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 ASTLQ6HA08 431 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 SPATA31D4Q6ZUB0 917 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 CEP57Q86XR8 500 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 DAW1Q8N136 415 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 NXPE3Q969Y0 559 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 PPP1R10Q96QC0 940 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 CCDC94Q9BW85 323 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 CDT1Q9H211 546 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 KMT5AQ9NQR1 393 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 FBXL21Q9UKT6 434 aa12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 RBM19Q9Y4C8 960 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-203ENST00000422245 VWA8A3KMH1 1905 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 H3BQV1 296 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 TRAPPC3O43617 180 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 B3GAT3O94766 335 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 POU2F2P09086 479 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 MYBP10242 640 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 MCF2P10911 925 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 FGFR3P22607 806 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 GUCY2CP25092 1073 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 HOXA9P31269 272 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 CLCN5P51795 746 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 MAPK7Q13164 816 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 IL17AQ16552 155 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 RINT1Q6NUQ1 792 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 C1orf186Q6ZWK4 172 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 GET4Q7L5D6 327 aaPredicted RBP12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 TMEM105Q8N8V8 129 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 LNX1Q8TBB1 728 aaPredicted RBP12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 TMX3Q96JJ7 454 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 MYADMQ96S97 322 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 ACO2Q99798 780 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 CLSTN3Q9BQT9 956 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 MMTAG2Q9BU76 263 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 CXCL16Q9H2A7 254 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 POLD4Q9HCU8 107 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 PTPRHQ9HD43 1115 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 SLC38A7Q9NVC3 462 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 KCND2Q9NZV8 630 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 KCNG1Q9UIX4 513 aa12.68□□□□□ -0.38
SQSTM1-203ENST00000422245 TRIP11Q15643 1979 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 SMIM28A0A1B0GU29 152 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 XYLBO75191 536 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 C8AP07357 584 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 PROZP22891 400 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 CDC25AP30304 524 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 MCM2P49736 904 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 UPP1Q16831 310 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 XKR4Q5GH76 650 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 PPM1LQ5SGD2 360 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 HYIQ5T013 277 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 ARL6IP4Q66PJ3 421 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 CWF19L1Q69YN2 538 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 DCLRE1AQ6PJP8 1040 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 MPZL3Q6UWV2 235 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 TAS1R3Q7RTX0 852 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 KCNK18Q7Z418 384 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 SPIRE2Q8WWL2 714 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 ATOH1Q92858 354 aaPredicted RBP12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 DDX27Q96GQ7 796 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 CDK5RAP3Q96JB5 506 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 SNX27Q96L92 541 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 PHOX2BQ99453 314 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 MTRRQ9UBK8 725 aa12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 ZFP37Q9Y6Q3 630 aaPredicted RBP12.67□□□□□ -0.38
SQSTM1-203ENST00000422245 CITO14578 2027 aa12.66□□□□□ -0.38
SQSTM1-203ENST00000422245 SLC26A4O43511 780 aa12.66□□□□□ -0.38
SQSTM1-203ENST00000422245 PLS3P13797 630 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms