RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 CPSF3Q9UKF6 684 aaKnown RBP20.37■□□□□ 0.85
PTCD3-204ENST00000418628 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.36■□□□□ 0.85
PTCD3-204ENST00000418628 TTC26A0AVF1 554 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 RPN1P04843 607 aaKnown RBP20.36■□□□□ 0.85
PTCD3-204ENST00000418628 HARSP12081 509 aaKnown RBP20.36■□□□□ 0.85
PTCD3-204ENST00000418628 KCNE1P15382 129 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 TNFSF9P41273 254 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 UBE2HP62256 183 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 RNASELQ05823 741 aaKnown RBP20.36■□□□□ 0.85
PTCD3-204ENST00000418628 STK4Q13043 487 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 PSMD2Q13200 908 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 KCNB1Q14721 858 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 POSTNQ15063 836 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 KYAT1Q16773 422 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 SLC10A6Q3KNW5 377 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 SLFN12LQ6IEE8 588 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 STXBP4Q6ZWJ1 553 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 RNF168Q8IYW5 571 aaPredicted RBP20.36■□□□□ 0.85
PTCD3-204ENST00000418628 IGSF21Q96ID5 467 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 ACAP3Q96P50 834 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 RPS6KC1Q96S38 1066 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 VN1R3Q9BXE9 311 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 ALG13Q9NP73 1137 aaKnown RBP20.36■□□□□ 0.85
PTCD3-204ENST00000418628 TOPORSQ9NS56 1045 aaPredicted RBP20.36■□□□□ 0.85
PTCD3-204ENST00000418628 SPG21Q9NZD8 308 aa20.36■□□□□ 0.85
PTCD3-204ENST00000418628 FSCN2O14926 492 aa20.35■□□□□ 0.85
PTCD3-204ENST00000418628 CLTAP09496 248 aa20.35■□□□□ 0.85
PTCD3-204ENST00000418628 CXCL8P10145 99 aa20.35■□□□□ 0.85
PTCD3-204ENST00000418628 GARTP22102 1010 aa20.35■□□□□ 0.85
PTCD3-204ENST00000418628 OSTNP61366 133 aa20.35■□□□□ 0.85
PTCD3-204ENST00000418628 POU5F1Q01860 360 aaKnown RBP20.35■□□□□ 0.85
PTCD3-204ENST00000418628 TUSC3Q13454 348 aa20.35■□□□□ 0.85
PTCD3-204ENST00000418628 ENOX2Q16206 610 aaKnown RBP20.35■□□□□ 0.85
PTCD3-204ENST00000418628 SEZ6Q53EL9 994 aa20.35■□□□□ 0.85
PTCD3-204ENST00000418628 CRELD2Q6UXH1 353 aaPredicted RBP20.35■□□□□ 0.85
PTCD3-204ENST00000418628 ZMAT2Q96NC0 199 aaKnown RBP20.35■□□□□ 0.85
PTCD3-204ENST00000418628 MSTO1Q9BUK6 570 aa20.35■□□□□ 0.85
PTCD3-204ENST00000418628 SLC39A2Q9NP94 309 aa20.35■□□□□ 0.85
PTCD3-204ENST00000418628 EXOC1Q9NV70 894 aa20.35■□□□□ 0.85
PTCD3-204ENST00000418628 SMIM28A0A1B0GU29 152 aa20.34■□□□□ 0.85
PTCD3-204ENST00000418628 TGFB1I1O43294 461 aa20.34■□□□□ 0.85
PTCD3-204ENST00000418628 THP07101 528 aa20.34■□□□□ 0.85
PTCD3-204ENST00000418628 ALDH7A1P49419 539 aaKnown RBP20.34■□□□□ 0.85
PTCD3-204ENST00000418628 YARSP54577 528 aaKnown RBP20.34■□□□□ 0.85
PTCD3-204ENST00000418628 PNOCQ13519 176 aa20.34■□□□□ 0.85
PTCD3-204ENST00000418628 POF1BQ8WVV4 589 aa20.34■□□□□ 0.85
PTCD3-204ENST00000418628 GBP3Q9H0R5 595 aa20.34■□□□□ 0.85
PTCD3-204ENST00000418628 PLEKHA5Q9HAU0 1116 aa20.34■□□□□ 0.85
PTCD3-204ENST00000418628 AGO2Q9UKV8 859 aaKnown RBP20.34■□□□□ 0.85
PTCD3-204ENST00000418628 NT5C1B-RDH14C9J2C7 533 aa20.33■□□□□ 0.85
PTCD3-204ENST00000418628 NRP1O14786 923 aa20.33■□□□□ 0.85
PTCD3-204ENST00000418628 SOX4Q06945 474 aaPredicted RBP20.33■□□□□ 0.85
PTCD3-204ENST00000418628 COL19A1Q14993 1142 aa20.33■□□□□ 0.85
PTCD3-204ENST00000418628 PTPROQ16827 1216 aa20.33■□□□□ 0.85
PTCD3-204ENST00000418628 TIGD5Q53EQ6 642 aa20.33■□□□□ 0.85
PTCD3-204ENST00000418628 GLRA4Q5JXX5 417 aa20.33■□□□□ 0.85
PTCD3-204ENST00000418628 MAFAQ8NHW3 353 aaPredicted RBP20.33■□□□□ 0.85
PTCD3-204ENST00000418628 TMEM174Q8WUU8 243 aa20.33■□□□□ 0.85
PTCD3-204ENST00000418628 CCDC34Q96HJ3 373 aa20.33■□□□□ 0.85
PTCD3-204ENST00000418628 CBWD1Q9BRT8 395 aa20.33■□□□□ 0.85
PTCD3-204ENST00000418628 C2orf16Q68DN1 1984 aa20.32■□□□□ 0.84
PTCD3-204ENST00000418628 IGFBP4P22692 258 aa20.32■□□□□ 0.84
PTCD3-204ENST00000418628 IRS1P35568 1242 aa20.32■□□□□ 0.84
PTCD3-204ENST00000418628 MATR3P43243 847 aaKnown RBP eCLIP20.32■□□□□ 0.84
PTCD3-204ENST00000418628 SNRPFP62306 86 aaKnown RBP20.32■□□□□ 0.84
PTCD3-204ENST00000418628 ZBTB6Q15916 424 aa20.32■□□□□ 0.84
PTCD3-204ENST00000418628 DDX53Q86TM3 631 aaKnown RBP20.32■□□□□ 0.84
PTCD3-204ENST00000418628 C12orf56Q8IXR9 622 aa20.32■□□□□ 0.84
PTCD3-204ENST00000418628 ZSWIM2Q8NEG5 633 aa20.32■□□□□ 0.84
PTCD3-204ENST00000418628 POMGNT1Q8WZA1 660 aa20.32■□□□□ 0.84
PTCD3-204ENST00000418628 FAM193BQ96PV7 902 aaPredicted RBP20.32■□□□□ 0.84
PTCD3-204ENST00000418628 PAAF1Q9BRP4 392 aa20.32■□□□□ 0.84
PTCD3-204ENST00000418628 KCTD10Q9H3F6 313 aa20.32■□□□□ 0.84
PTCD3-204ENST00000418628 TLR9Q9NR96 1032 aa20.32■□□□□ 0.84
PTCD3-204ENST00000418628 CACNG4Q9UBN1 327 aa20.32■□□□□ 0.84
PTCD3-204ENST00000418628 F8W810 466 aa20.31■□□□□ 0.84
PTCD3-204ENST00000418628 TMEM189-UBE2V1I3L0A0 370 aa20.31■□□□□ 0.84
PTCD3-204ENST00000418628 KIAA0391O15091 583 aaKnown RBP20.31■□□□□ 0.84
PTCD3-204ENST00000418628 ERVFC1P60507 584 aa20.31■□□□□ 0.84
PTCD3-204ENST00000418628 SYCP3Q8IZU3 236 aa20.31■□□□□ 0.84
PTCD3-204ENST00000418628 TMEM169Q96HH4 297 aa20.31■□□□□ 0.84
PTCD3-204ENST00000418628 FBXL18Q96ME1 805 aa20.31■□□□□ 0.84
PTCD3-204ENST00000418628 TSPAN18Q96SJ8 248 aa20.31■□□□□ 0.84
PTCD3-204ENST00000418628 ZBP1Q9H171 429 aa20.31■□□□□ 0.84
PTCD3-204ENST00000418628 AGPAT3Q9NRZ7 376 aa20.31■□□□□ 0.84
PTCD3-204ENST00000418628 FAN1Q9Y2M0 1017 aa20.31■□□□□ 0.84
PTCD3-204ENST00000418628 KINO60870 393 aaKnown RBP20.3■□□□□ 0.84
PTCD3-204ENST00000418628 PRPF40AO75400 957 aaKnown RBP20.3■□□□□ 0.84
PTCD3-204ENST00000418628 ALDH2P05091 517 aa20.3■□□□□ 0.84
PTCD3-204ENST00000418628 ACOT2P49753 483 aa20.3■□□□□ 0.84
PTCD3-204ENST00000418628 PPP2R3AQ06190 1150 aa20.3■□□□□ 0.84
PTCD3-204ENST00000418628 KNOP1Q1ED39 458 aaKnown RBP20.3■□□□□ 0.84
PTCD3-204ENST00000418628 CD300LGQ6UXG3 332 aa20.3■□□□□ 0.84
PTCD3-204ENST00000418628 BRSK2Q8IWQ3 736 aa20.3■□□□□ 0.84
PTCD3-204ENST00000418628 CD302Q8IX05 232 aa20.3■□□□□ 0.84
PTCD3-204ENST00000418628 UROC1Q96N76 676 aa20.3■□□□□ 0.84
PTCD3-204ENST00000418628 GSDMAQ96QA5 445 aa20.3■□□□□ 0.84
PTCD3-204ENST00000418628 NSUN3Q9H649 340 aaKnown RBP20.3■□□□□ 0.84
PTCD3-204ENST00000418628 RPF1Q9H9Y2 349 aaKnown RBP20.3■□□□□ 0.84
PTCD3-204ENST00000418628 LMBRD1Q9NUN5 540 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms