RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TTC4O95801 387 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 MYBL1P10243 752 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 GCKP35557 465 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 FMO1Q01740 532 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 SLC15A2Q16348 729 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 SAMD1Q6SPF0 538 aaPredicted RBP19.74■□□□□ 0.75
CCDC3-201ENST00000378825 HHIPL2Q6UWX4 724 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 TRMT10CQ7L0Y3 403 aaKnown RBP19.74■□□□□ 0.75
CCDC3-201ENST00000378825 CYFIP1Q7L576 1253 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 DHX38Q92620 1227 aaKnown RBP19.74■□□□□ 0.75
CCDC3-201ENST00000378825 SERPINB12Q96P63 405 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 ROPN1BQ9BZX4 212 aaPredicted RBP19.74■□□□□ 0.75
CCDC3-201ENST00000378825 KIF9Q9HAQ2 790 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 ROPN1Q9HAT0 212 aaPredicted RBP19.74■□□□□ 0.75
CCDC3-201ENST00000378825 FAM198AQ9UFP1 575 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 NAALADL1Q9UQQ1 740 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 THAP12O43422 761 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 HIP1RO75146 1068 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 CFBP00751 764 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 CYP3A4P08684 503 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 GM2AP17900 193 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 TAC1P20366 129 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 TRIM68Q6AZZ1 485 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 CCHCR1Q8TD31 782 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 MYLK2Q9H1R3 596 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 NDUFB10O96000 172 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 TARSP26639 723 aaKnown RBP19.73■□□□□ 0.75
CCDC3-201ENST00000378825 WDR4P57081 412 aaKnown RBP19.73■□□□□ 0.75
CCDC3-201ENST00000378825 SEMA4DQ92854 862 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 SLC5A5Q92911 643 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 GLT8D2Q9H1C3 349 aa19.73■□□□□ 0.75
CCDC3-201ENST00000378825 TMX4Q9H1E5 349 aaPredicted RBP19.73■□□□□ 0.75
CCDC3-201ENST00000378825 CIITAP33076 1130 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 RWDD2BP57060 319 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 DNAJC3Q13217 504 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 SYDE2Q5VT97 1194 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 FMNL3Q8IVF7 1028 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 LRRC19Q9H756 370 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 TMEM150BA6NC51 233 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 ENO4A6NNW6 628 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 K7ENM7 598 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 PSMD10O75832 226 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 SMNDC1O75940 238 aaKnown RBP eCLIP19.72■□□□□ 0.75
CCDC3-201ENST00000378825 ATP2A2P16615 1042 aaKnown RBP19.72■□□□□ 0.75
CCDC3-201ENST00000378825 VAMP7P51809 220 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 CYP4F22Q6NT55 531 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 LBHD1Q9BQE6 289 aaPredicted RBP19.72■□□□□ 0.75
CCDC3-201ENST00000378825 HAO1Q9UJM8 370 aa19.72■□□□□ 0.75
CCDC3-201ENST00000378825 ANKRD31Q8N7Z5 1873 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 ARP10275 920 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 ICA1Q05084 483 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 NFIL3Q16649 462 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 ERP27Q96DN0 273 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 MRRFQ96E11 262 aaKnown RBP19.71■□□□□ 0.75
CCDC3-201ENST00000378825 ZNFX1Q9P2E3 1918 aaKnown RBP19.71■□□□□ 0.75
CCDC3-201ENST00000378825 GGPS1O95749 300 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 RRM1P23921 792 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 ALDH1B1P30837 517 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 GBP1P32455 592 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 CAPN12Q6ZSI9 719 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 CROCCP2Q86T23 111 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 UNC45AQ9H3U1 944 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 KLHL14Q9P2G3 628 aa19.71■□□□□ 0.75
CCDC3-201ENST00000378825 UNC5CO95185 931 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 TMED2Q15363 201 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 NLGN1Q8N2Q7 840 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 TMEM117Q9H0C3 514 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 TDRD3Q9H7E2 651 aaKnown RBP19.7■□□□□ 0.74
CCDC3-201ENST00000378825 TOPORSQ9NS56 1045 aaPredicted RBP19.7■□□□□ 0.74
CCDC3-201ENST00000378825 ADCY8P40145 1251 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 RASA3Q14644 834 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 CLUL1Q15846 466 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 CAPRIN2Q6IMN6 1127 aaKnown RBP19.7■□□□□ 0.74
CCDC3-201ENST00000378825 MIS18BP1Q6P0N0 1132 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 DCAF4Q8WV16 495 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 C7orf43Q8WVR3 580 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 CCDC127Q96BQ5 260 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 ZDHHC15Q96MV8 337 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 LXNQ9BS40 222 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 PITPNM3Q9BZ71 974 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 WHRNQ9P202 907 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 GRID1Q9ULK0 1009 aa19.7■□□□□ 0.74
CCDC3-201ENST00000378825 GREB1LQ9C091 1923 aaPredicted RBP19.7■□□□□ 0.74
CCDC3-201ENST00000378825 H0Y3Z8 333 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 GAS7O60861 476 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 ADRB2P07550 413 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 CCNB1P14635 433 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 LACTBP83111 547 aaPredicted RBP19.69■□□□□ 0.74
CCDC3-201ENST00000378825 MTFR1Q15390 333 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 TAF11Q15544 211 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 ZNF449Q6P9G9 518 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 GBP7Q8N8V2 638 aaPredicted RBP19.69■□□□□ 0.74
CCDC3-201ENST00000378825 C12orf50Q8NA57 414 aaPredicted RBP19.69■□□□□ 0.74
CCDC3-201ENST00000378825 CNKSR1Q969H4 720 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 SNF8Q96H20 258 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 YIPF3Q9GZM5 350 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 CHKBQ9Y259 395 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 LRRC37AA6NMS7 1700 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 FSCN2O14926 492 aa19.69■□□□□ 0.74
CCDC3-201ENST00000378825 MAP3K13O43283 966 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms