RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 THP07101 528 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 CXCL8P10145 99 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 ADSSP30520 456 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 HOXD13P35453 343 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 KRT17Q04695 432 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 ALCAMQ13740 583 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 SKIV2LQ15477 1246 aaKnown RBP14.59□□□□□ -0.07
VPS28-202ENST00000377348 SLC10A6Q3KNW5 377 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 KMT5BQ4FZB7 885 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 TCEAL5Q5H9L2 206 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 ALKAL1Q6UXT8 129 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 ADGRD2Q7Z7M1 963 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 SYCP3Q8IZU3 236 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 ZSWIM2Q8NEG5 633 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 MICAL1Q8TDZ2 1067 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 ZMAT2Q96NC0 199 aaKnown RBP14.59□□□□□ -0.07
VPS28-202ENST00000377348 VN1R3Q9BXE9 311 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 TLR9Q9NR96 1032 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 TOPORSQ9NS56 1045 aaPredicted RBP14.59□□□□□ -0.07
VPS28-202ENST00000377348 EXOC7Q9UPT5 735 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 STYXL1Q9Y6J8 313 aa14.59□□□□□ -0.07
VPS28-202ENST00000377348 TDRD15B5MCY1 1934 aaKnown RBP14.58□□□□□ -0.07
VPS28-202ENST00000377348 ATG2AQ2TAZ0 1938 aa14.58□□□□□ -0.07
VPS28-202ENST00000377348 CLTAP09496 248 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 UBE3AQ05086 875 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 SPAG1Q07617 926 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 TUSC3Q13454 348 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 ENOX2Q16206 610 aaKnown RBP14.58□□□□□ -0.08
VPS28-202ENST00000377348 TIGD5Q53EQ6 642 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 XKR4Q5GH76 650 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 PLPP4Q5VZY2 271 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 EPM2AIP1Q7L775 607 aaPredicted RBP14.58□□□□□ -0.08
VPS28-202ENST00000377348 NELFCDQ8IXH7 590 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 TMEM130Q8N3G9 435 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 SCFD1Q8WVM8 642 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 POMGNT1Q8WZA1 660 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 PPP1R10Q96QC0 940 aaKnown RBP14.58□□□□□ -0.08
VPS28-202ENST00000377348 TCF25Q9BQ70 676 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 NSUN3Q9H649 340 aaKnown RBP14.58□□□□□ -0.08
VPS28-202ENST00000377348 GOLGA2P5Q9HBQ8 144 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 EXOC1Q9NV70 894 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 CNTN3Q9P232 1028 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 PUF60Q9UHX1 559 aaKnown RBP14.58□□□□□ -0.08
VPS28-202ENST00000377348 AGO2Q9UKV8 859 aaKnown RBP14.58□□□□□ -0.08
VPS28-202ENST00000377348 LZTS1Q9Y250 596 aa14.58□□□□□ -0.08
VPS28-202ENST00000377348 FSCN2O14926 492 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 EIF3DO15371 548 aaKnown RBP eCLIP14.57□□□□□ -0.08
VPS28-202ENST00000377348 NR1I2O75469 434 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 RPN1P04843 607 aaKnown RBP14.57□□□□□ -0.08
VPS28-202ENST00000377348 IGFBP6P24592 240 aaPredicted RBP14.57□□□□□ -0.08
VPS28-202ENST00000377348 GTF2F1P35269 517 aaKnown RBP eCLIP14.57□□□□□ -0.08
VPS28-202ENST00000377348 ACOT2P49753 483 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 FAM160A1Q05DH4 1040 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 SOX4Q06945 474 aaPredicted RBP14.57□□□□□ -0.08
VPS28-202ENST00000377348 DPYDQ12882 1025 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 STK4Q13043 487 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 SLFN12LQ6IEE8 588 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 STXBP4Q6ZWJ1 553 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 VPS52Q8N1B4 723 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 TMEM87AQ8NBN3 555 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 KIAA0895Q8NCT3 520 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 ZNF507Q8TCN5 953 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 HASPINQ8TF76 798 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 AUTS2Q8WXX7 1259 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 C18orf25Q96B23 403 aaPredicted RBP14.57□□□□□ -0.08
VPS28-202ENST00000377348 SAAL1Q96ER3 474 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 CBWD1Q9BRT8 395 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 PCIF1Q9H4Z3 704 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 ENTPD7Q9NQZ7 604 aa14.57□□□□□ -0.08
VPS28-202ENST00000377348 CPSF3Q9UKF6 684 aaKnown RBP14.57□□□□□ -0.08
VPS28-202ENST00000377348 TTC26A0AVF1 554 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 HIDE1A8MVS5 230 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 LACTBL1A8MY62 500 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 MYL1P05976 194 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 KCNE1P15382 129 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 CA8P35219 290 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 PNOCQ13519 176 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 HSP90AA2PQ14568 343 aaPredicted RBP14.56□□□□□ -0.08
VPS28-202ENST00000377348 POSTNQ15063 836 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 TAS1R1Q7RTX1 841 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 TMC7Q7Z402 723 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 DDX53Q86TM3 631 aaKnown RBP14.56□□□□□ -0.08
VPS28-202ENST00000377348 RBM23Q86U06 439 aaKnown RBP14.56□□□□□ -0.08
VPS28-202ENST00000377348 NOC3LQ8WTT2 800 aaKnown RBP14.56□□□□□ -0.08
VPS28-202ENST00000377348 ERCC4Q92889 916 aaPredicted RBP14.56□□□□□ -0.08
VPS28-202ENST00000377348 FAM212AQ96EL1 285 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 ZBP1Q9H171 429 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 IGFLR1Q9H665 355 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 TMEM206Q9H813 350 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 RPF1Q9H9Y2 349 aaKnown RBP14.56□□□□□ -0.08
VPS28-202ENST00000377348 TRIP11Q15643 1979 aa14.56□□□□□ -0.08
VPS28-202ENST00000377348 A0A0C4DFX4 3053 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 CARNS1A5YM72 827 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 GOLGA8IPA6NC78 632 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 GOLGA8JA6NMD2 632 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 PER2O15055 1255 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 TGFB1I1O43294 461 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 KIF4AO95239 1232 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 CLCNKBP51801 687 aa14.55□□□□□ -0.08
VPS28-202ENST00000377348 PPP2R3AQ06190 1150 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms