RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 GYPCP04921 128 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 PDHA1P08559 390 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 FGFR4P22455 802 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 RAD23BP54727 409 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 NAB2Q15742 525 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 ITPRIPL1Q6GPH6 555 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 LRIG3Q6UXM1 1119 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 RHPN2Q8IUC4 686 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 NDUFAF2Q8N183 169 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 ENGASEQ8NFI3 743 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 ING2Q9H160 280 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 TRABDQ9H4I3 376 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 CREB3O43889 395 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 E2F6O75461 281 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 ITIH2P19823 946 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 FMO5P49326 533 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 ARHGDIAP52565 204 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 EFNA5P52803 228 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 ZNF34Q8IZ26 560 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 CNPY4Q8N129 248 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 THEM5Q8N1Q8 247 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 YY1AP1Q9H869 796 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 FAM217BQ9NTX9 383 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-203ENST00000372407 TCP11X1B4DZS4 312 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 GNAT1P11488 350 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 DPEP1P16444 411 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 EFHC2Q5JST6 749 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 SLC35G2Q8TBE7 412 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 ACAP3Q96P50 834 aa12.09□□□□□ -0.47
PTPRF-203ENST00000372407 EIF2AQ9BY44 585 aaKnown RBP12.09□□□□□ -0.47
PTPRF-203ENST00000372407 WARS2Q9UGM6 360 aaKnown RBP12.09□□□□□ -0.47
PTPRF-203ENST00000372407 CEMIPQ8WUJ3 1361 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 IQCA1LA6NCM1 817 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 SERPINB4P48594 390 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 TMED1Q13445 227 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 RGS9BPQ6ZS82 235 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 FAM167BQ9BTA0 163 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 POLR3CQ9BUI4 534 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-203ENST00000372407 YIPF3Q9GZM5 350 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 ACAD9Q9H845 621 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 SLC8A2Q9UPR5 921 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 BNIP3LO60238 219 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 HNRNPCL1O60812 293 aaKnown RBP12.08□□□□□ -0.48
PTPRF-203ENST00000372407 CSF1RP07333 972 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 SCN4BQ8IWT1 228 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 RIN2Q8WYP3 895 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-203ENST00000372407 SGSM3Q96HU1 749 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 TRPV6Q9H1D0 765 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 ADA2Q9NZK5 511 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 ABT1Q9ULW3 272 aaKnown RBP12.08□□□□□ -0.48
PTPRF-203ENST00000372407 SLC26A4O43511 780 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 SNX2O60749 519 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 DGAT1O75907 488 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 PID1Q7Z2X4 250 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 CEP70Q8NHQ1 597 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 C18orf8Q96DM3 657 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 RBM15Q96T37 977 aaKnown RBP eCLIP12.08□□□□□ -0.48
PTPRF-203ENST00000372407 FOXP3Q9BZS1 431 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 CYP4F11Q9HBI6 524 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 RBM12Q9NTZ6 932 aaKnown RBP12.08□□□□□ -0.48
PTPRF-203ENST00000372407 ZFATQ9P243 1243 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 TRIM10Q9UDY6 481 aa12.08□□□□□ -0.48
PTPRF-203ENST00000372407 PHF2O75151 1096 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 GYS1P13807 737 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 EIF3EP60228 445 aaKnown RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 TTLL4Q14679 1199 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 SF3B3Q15393 1217 aaKnown RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 CYFIP1Q7L576 1253 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 ELOA2Q8IYF1 753 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 ZNF473Q8WTR7 871 aaKnown RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 KIFC3Q9BVG8 833 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 WDR35Q9P2L0 1181 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 SLC13A4Q9UKG4 626 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 CCDC195A0A1B0GUA6 201 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 H3BRJ5 948 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 MCF2P10911 925 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 INTS5Q6P9B9 1019 aaKnown RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 NYAP1Q6ZVC0 841 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 ZNF710Q8N1W2 664 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 NOA1Q8NC60 698 aaKnown RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 OR6P1Q8NGX9 317 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 ANKS1AQ92625 1134 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 NCLNQ969V3 563 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 ALKBH8Q96BT7 664 aaKnown RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 STAMBPL1Q96FJ0 436 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 C9orf72Q96LT7 481 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 TRIM51Q9BSJ1 452 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 PDS5AQ29RF7 1337 aaKnown RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 A8MXQ7 604 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 PRAMEP78395 509 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 TSPY1Q01534 308 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 EFTUD2Q15029 972 aaKnown RBP eCLIP12.07□□□□□ -0.482e-6■■■■□ 22.2
PTPRF-203ENST00000372407 WDR72Q3MJ13 1102 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 HABP4Q5JVS0 413 aaKnown RBP12.07□□□□□ -0.48
PTPRF-203ENST00000372407 RCOR2Q8IZ40 523 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 SLC26A7Q8TE54 656 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 ULK4Q96C45 1275 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 ERGIC2Q96RQ1 377 aa12.07□□□□□ -0.48
PTPRF-203ENST00000372407 REEP2Q9BRK0 252 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms