RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 BIRC3Q13489 604 aa23.37■■□□□ 1.33
SHMT1-202ENST00000352886 GNPTABQ3T906 1256 aa23.37■■□□□ 1.33
SHMT1-202ENST00000352886 ANGEL2Q5VTE6 544 aaKnown RBP23.37■■□□□ 1.33
SHMT1-202ENST00000352886 MIS18BP1Q6P0N0 1132 aa23.37■■□□□ 1.33
SHMT1-202ENST00000352886 TTC27Q6P3X3 843 aa23.37■■□□□ 1.33
SHMT1-202ENST00000352886 TXLNGYQ9BZA5 131 aa23.37■■□□□ 1.33
SHMT1-202ENST00000352886 CNOT8Q9UFF9 292 aaKnown RBP23.37■■□□□ 1.33
SHMT1-202ENST00000352886 LCTP09848 1927 aa23.36■■□□□ 1.33
SHMT1-202ENST00000352886 SPATA31C2B4DYI2 1134 aa23.36■■□□□ 1.33
SHMT1-202ENST00000352886 C19orf81C9J6K1 198 aa23.36■■□□□ 1.33
SHMT1-202ENST00000352886 PLTPP55058 493 aa23.36■■□□□ 1.33
SHMT1-202ENST00000352886 LMBRD2Q68DH5 695 aaPredicted RBP23.36■■□□□ 1.33
SHMT1-202ENST00000352886 CATSPERGQ6ZRH7 1159 aa23.36■■□□□ 1.33
SHMT1-202ENST00000352886 ZNF516Q92618 1163 aa23.36■■□□□ 1.33
SHMT1-202ENST00000352886 TSPYL1Q9H0U9 437 aa23.36■■□□□ 1.33
SHMT1-202ENST00000352886 C1orf112Q9NSG2 853 aa23.36■■□□□ 1.33
SHMT1-202ENST00000352886 PCYOX1Q9UHG3 505 aa23.36■■□□□ 1.33
SHMT1-202ENST00000352886 PCDHA3Q9Y5H8 950 aa23.36■■□□□ 1.33
SHMT1-202ENST00000352886 TCRBV7S2A1N4TA0A589 114 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 CORO7P57737 925 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 XKR3Q5GH77 459 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 CCDC137Q6PK04 289 aaKnown RBP23.35■■□□□ 1.33
SHMT1-202ENST00000352886 CYFIP1Q7L576 1253 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 ENOSF1Q7L5Y1 443 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 ARFGAP2Q8N6H7 521 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 ATP2A1O14983 1001 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 SUPT20HL2P0C7V6 817 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 POLGP54098 1239 aaPredicted RBP23.35■■□□□ 1.33
SHMT1-202ENST00000352886 DRG2P55039 364 aaKnown RBP23.35■■□□□ 1.33
SHMT1-202ENST00000352886 SP2Q02086 613 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 SLC20A2Q08357 652 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 EMC2Q15006 297 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 CLEC16AQ2KHT3 1053 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 SUPT20HL1Q3ZLR7 823 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 SLC13A5Q86YT5 568 aaPredicted RBP23.35■■□□□ 1.33
SHMT1-202ENST00000352886 FBXO25Q8TCJ0 367 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 RASSF4Q9H2L5 321 aa23.35■■□□□ 1.33
SHMT1-202ENST00000352886 H0YCG3 227 aa23.34■■□□□ 1.33
SHMT1-202ENST00000352886 EXTL3O43909 919 aa23.34■■□□□ 1.33
SHMT1-202ENST00000352886 ZC3H11AO75152 810 aaKnown RBP eCLIP23.34■■□□□ 1.33
SHMT1-202ENST00000352886 STAM2O75886 525 aa23.34■■□□□ 1.33
SHMT1-202ENST00000352886 ENPEPQ07075 957 aa23.34■■□□□ 1.33
SHMT1-202ENST00000352886 ZDHHC24Q6UX98 284 aa23.34■■□□□ 1.33
SHMT1-202ENST00000352886 C15orf39Q6ZRI6 1047 aa23.34■■□□□ 1.33
SHMT1-202ENST00000352886 EPN3Q9H201 632 aa23.34■■□□□ 1.33
SHMT1-202ENST00000352886 KRT71Q3SY84 523 aa23.34■■□□□ 1.33
SHMT1-202ENST00000352886 ZNF526Q8TF50 670 aaPredicted RBP23.34■■□□□ 1.33
SHMT1-202ENST00000352886 TMEM143Q96AN5 459 aa23.34■■□□□ 1.33
SHMT1-202ENST00000352886 MTUS1Q9ULD2 1270 aa23.34■■□□□ 1.33
SHMT1-202ENST00000352886 PODXLO00592 558 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 TNNI1P19237 187 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 RWDD2BP57060 319 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 IFFO1Q0D2I5 559 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 PTGISQ16647 500 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 SPDYCQ5MJ68 293 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 AGBL2Q5U5Z8 902 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 FNBP1Q96RU3 617 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 LRRC4CQ9HCJ2 640 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 GRHL1Q9NZI5 618 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 SPDYE16A6NNV3 312 aaPredicted RBP23.33■■□□□ 1.33
SHMT1-202ENST00000352886 FZD9O00144 591 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 RPL21P46778 160 aaKnown RBP23.33■■□□□ 1.33
SHMT1-202ENST00000352886 WNT7BP56706 349 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 PPARDQ03181 441 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 STRN3Q13033 797 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 ODF2Q5BJF6 829 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 KIAA1586Q9HCI6 787 aa23.33■■□□□ 1.33
SHMT1-202ENST00000352886 NOVA2Q9UNW9 492 aaKnown RBP23.33■■□□□ 1.33
SHMT1-202ENST00000352886 ATP4AP20648 1035 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 ACOT2P49753 483 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 PMS2P54278 862 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 NLRP11P59045 1033 aaKnown RBP23.32■■□□□ 1.32
SHMT1-202ENST00000352886 APOBEC3FQ8IUX4 373 aaKnown RBP23.32■■□□□ 1.32
SHMT1-202ENST00000352886 EFCAB13Q8IY85 973 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 KLRG1Q96E93 195 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 ANAPC7Q9UJX3 599 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 RARAP10276 462 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 UNGP13051 313 aaPredicted RBP23.32■■□□□ 1.32
SHMT1-202ENST00000352886 ABCD1P33897 745 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 CLDN10P78369 228 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 PSMD6Q15008 389 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 CYP1B1Q16678 543 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 CCDC105Q8IYK2 499 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 PSPC1Q8WXF1 523 aaKnown RBP23.32■■□□□ 1.32
SHMT1-202ENST00000352886 ZNF302Q9NR11 478 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 PTPN22Q9Y2R2 807 aa23.32■■□□□ 1.32
SHMT1-202ENST00000352886 COILP38432 576 aaPredicted RBP23.31■■□□□ 1.32
SHMT1-202ENST00000352886 SEC24CP53992 1094 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 EIF3BP55884 814 aaKnown RBP23.31■■□□□ 1.32
SHMT1-202ENST00000352886 SIX1Q15475 284 aaPredicted RBP23.31■■□□□ 1.32
SHMT1-202ENST00000352886 ZACNQ401N2 412 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 WDR44Q5JSH3 913 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 FAM81BQ96LP2 452 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 EPB41L4BQ9H329 900 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 HOXC10Q9NYD6 342 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 SLC12A6Q9UHW9 1150 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 AGO2Q9UKV8 859 aaKnown RBP23.31■■□□□ 1.32
SHMT1-202ENST00000352886 FAM169AQ9Y6X4 670 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 DCDC2CA8MYV0 355 aa23.31■■□□□ 1.32
SHMT1-202ENST00000352886 HLA-DRAP01903 254 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms