RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 OGTO15294 1046 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 FGFR1OPO95684 399 aaKnown RBP9.98□□□□□ -0.81
USP4-202ENST00000351842 CD58P19256 250 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 BFSP1Q12934 665 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 FKBP15Q5T1M5 1219 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 JADE1Q6IE81 842 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 FAM114A1Q8IWE2 563 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 PPM1KQ8N3J5 372 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 ZBED2Q9BTP6 218 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 TMX1Q9H3N1 280 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 GCNT4Q9P109 453 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 TRAF3IP3Q9Y228 551 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 PRRC2BQ5JSZ5 2229 aaKnown RBP9.98□□□□□ -0.81
USP4-202ENST00000351842 REV3LO60673 3130 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 A0A1B0GUA9 196 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 ZNF500O60304 480 aaPredicted RBP9.98□□□□□ -0.81
USP4-202ENST00000351842 ALCAMQ13740 583 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 SLFN12LQ6IEE8 588 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 NME8Q8N427 588 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 MMS19Q96T76 1030 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 LSM14BQ9BX40 385 aaKnown RBP9.98□□□□□ -0.81
USP4-202ENST00000351842 MROH7Q68CQ1 1323 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 CNTNAP2Q9UHC6 1331 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 ITGA4P13612 1032 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 MXI1P50539 228 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 CRELD2Q6UXH1 353 aaPredicted RBP9.97□□□□□ -0.81
USP4-202ENST00000351842 TSHZ1Q6ZSZ6 1077 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 GLYCTKQ8IVS8 523 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 GOLGA5Q8TBA6 731 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 TAS1R2Q8TE23 839 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 LBHD1Q9BQE6 289 aaPredicted RBP9.97□□□□□ -0.81
USP4-202ENST00000351842 PAAF1Q9BRP4 392 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 TMEM134Q9H6X4 195 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 TUBGCP4Q9UGJ1 667 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 PUF60Q9UHX1 559 aaKnown RBP9.97□□□□□ -0.81
USP4-202ENST00000351842 TIMM13Q9Y5L4 95 aaPredicted RBP9.97□□□□□ -0.81
USP4-202ENST00000351842 LRRIQ3A6PVS8 624 aaPredicted RBP9.97□□□□□ -0.81
USP4-202ENST00000351842 PPEF2O14830 753 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 EXTL3O43909 919 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 ZC3H11AO75152 810 aaKnown RBP eCLIP9.97□□□□□ -0.81
USP4-202ENST00000351842 CD4P01730 458 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 ITGB3P05106 788 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 COL6A1P12109 1028 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 PIK3CAP42336 1068 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 ZNF75DP51815 510 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 MYL7Q01449 175 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 BMT2Q1RMZ1 405 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 TRIM71Q2Q1W2 868 aaKnown RBP9.97□□□□□ -0.81
USP4-202ENST00000351842 EDRF1Q3B7T1 1238 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 CACNA2D4Q7Z3S7 1137 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 SLC17A8Q8NDX2 589 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 ZMAT2Q96NC0 199 aaKnown RBP9.97□□□□□ -0.81
USP4-202ENST00000351842 STRA6Q9BX79 667 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 GTPBP4Q9BZE4 634 aaKnown RBP9.97□□□□□ -0.81
USP4-202ENST00000351842 THAP9Q9H5L6 903 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 CERS4Q9HA82 394 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 SEPT11Q9NVA2 429 aaKnown RBP9.97□□□□□ -0.81
USP4-202ENST00000351842 INTS13Q9NVM9 706 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 TNFSF13BQ9Y275 285 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 TPM3P06753 285 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 ZNF18P17022 549 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 DEFB103AP81534 67 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 PPP2R3AQ06190 1150 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 CYP24A1Q07973 514 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 TRPC3Q13507 836 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 SLC10A6Q3KNW5 377 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 VWA3BQ502W6 1294 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 CDKAL1Q5VV42 579 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 ZPBP2Q6X784 338 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 RTN4RL1Q86UN2 441 aaPredicted RBP9.97□□□□□ -0.81
USP4-202ENST00000351842 EFCAB13Q8IY85 973 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 SEPT8Q92599 483 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 KAT5Q92993 513 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 SLC35C1Q96A29 364 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 ARID3AQ99856 593 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 ACP6Q9NPH0 428 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.97□□□□□ -0.81
USP4-202ENST00000351842 KCNG1Q9UIX4 513 aa9.97□□□□□ -0.81
USP4-202ENST00000351842 BRWD1Q9NSI6 2320 aa9.96□□□□□ -0.81
USP4-202ENST00000351842 EPHB6O15197 1021 aa9.96□□□□□ -0.81
USP4-202ENST00000351842 CAVIN2O95810 425 aa9.96□□□□□ -0.81
USP4-202ENST00000351842 AFPP02771 609 aaKnown RBP9.96□□□□□ -0.81
USP4-202ENST00000351842 POLR2FP61218 127 aaKnown RBP9.96□□□□□ -0.81
USP4-202ENST00000351842 MAN2A1Q16706 1144 aa9.96□□□□□ -0.81
USP4-202ENST00000351842 ZNF365Q70YC5 407 aa9.96□□□□□ -0.81
USP4-202ENST00000351842 SV2AQ7L0J3 742 aa9.96□□□□□ -0.81
USP4-202ENST00000351842 CAGE1Q8TC20 777 aa9.96□□□□□ -0.81
USP4-202ENST00000351842 CXXC1Q9P0U4 656 aaPredicted RBP9.96□□□□□ -0.81
USP4-202ENST00000351842 GRXCR1A8MXD5 290 aa9.96□□□□□ -0.82
USP4-202ENST00000351842 CST3P01034 146 aaPredicted RBP9.96□□□□□ -0.82
USP4-202ENST00000351842 POLR2BP30876 1174 aaKnown RBP9.96□□□□□ -0.82
USP4-202ENST00000351842 HOXC8P31273 242 aa9.96□□□□□ -0.82
USP4-202ENST00000351842 PPP1R2P41236 205 aa9.96□□□□□ -0.82
USP4-202ENST00000351842 RAP1GAPP47736 663 aa9.96□□□□□ -0.82
USP4-202ENST00000351842 EPHB4P54760 987 aa9.96□□□□□ -0.82
USP4-202ENST00000351842 PPP4R3CPQ6ZMV5 832 aa9.96□□□□□ -0.82
USP4-202ENST00000351842 CCDC186Q7Z3E2 898 aa9.96□□□□□ -0.82
USP4-202ENST00000351842 PARD3BQ8TEW8 1205 aa9.96□□□□□ -0.82
USP4-202ENST00000351842 B3GALT6Q96L58 329 aa9.96□□□□□ -0.82
USP4-202ENST00000351842 AGAP1Q9UPQ3 857 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms