RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 UBE2Q1Q7Z7E8 422 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 DDX42Q86XP3 938 aaKnown RBP eCLIP11.1□□□□□ -0.63
UPF3B-201ENST00000276201 KATNBL1Q9H079 304 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 DDX47Q9H0S4 455 aaKnown RBP11.1□□□□□ -0.63
UPF3B-201ENST00000276201 ADAM7Q9H2U9 754 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 POLD4Q9HCU8 107 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 COL20A1Q9P218 1284 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 AMFRQ9UKV5 643 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 OGDHLQ9ULD0 1010 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 SEPT4O43236 478 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 UCHL3P15374 230 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 ALDH5A1P51649 535 aaPredicted RBP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 GALNTL6Q49A17 601 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 MFSD5Q6N075 450 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 CEP57Q86XR8 500 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 SLC30A5Q8TAD4 765 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 NEK9Q8TD19 979 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 SYTL5Q8TDW5 730 aaPredicted RBP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 MORC4Q8TE76 937 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 RUNDC3BQ96NL0 473 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 SCLT1Q96NL6 688 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 ERP44Q9BS26 406 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 MAF1Q9H063 256 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 METTL14Q9HCE5 456 aaKnown RBP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 PARP2Q9UGN5 583 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 C15orf41Q9Y2V0 281 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 ASB14A6NK59 587 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 DDX3YO15523 660 aaKnown RBP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 TTI1O43156 1089 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 WFS1O76024 890 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 FARP2O94887 1054 aaPredicted RBP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 GGPS1O95749 300 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 AFPP02771 609 aaKnown RBP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 TMEM253P0C7T8 217 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 SCP2P22307 547 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 MNX1P50219 401 aaPredicted RBP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 HSD17B4P51659 736 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 GHRHRQ02643 423 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 NFIL3Q16649 462 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 BMT2Q1RMZ1 405 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 TRPM8Q7Z2W7 1104 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 KCNK18Q7Z418 384 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 MCF2L2Q86YR7 1114 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 SCFD1Q8WVM8 642 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 LENG1Q96BZ8 264 aaPredicted RBP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 ROPN1BQ9BZX4 212 aaPredicted RBP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 TRIM6Q9C030 488 aaPredicted RBP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 ROPN1Q9HAT0 212 aaPredicted RBP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 SAMD15Q9P1V8 674 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 BCCIPQ9P287 314 aaKnown RBP eCLIP11.09□□□□□ -0.63
UPF3B-201ENST00000276201 AMACRQ9UHK6 382 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 TRPC6Q9Y210 931 aa11.09□□□□□ -0.63
UPF3B-201ENST00000276201 GOLGA6L10A0A0M3HER8 536 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 DCDC2CA8MYV0 355 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 O00370 1275 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 SLC37A4O43826 429 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 MSCO60682 206 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 CAND2O75155 1236 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 MMEP08473 750 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 CHN1P15882 459 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 CCND1P24385 295 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 PON1P27169 355 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 CLK2P49760 499 aaKnown RBP11.08□□□□□ -0.64
UPF3B-201ENST00000276201 ADCY7P51828 1080 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 PMS2P54278 862 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 MLLT1Q03111 559 aaPredicted RBP11.08□□□□□ -0.64
UPF3B-201ENST00000276201 GRIK3Q13003 919 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 TRAF1Q13077 416 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 ACVR2BQ13705 512 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 LRRC41Q15345 812 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 EPHA7Q15375 998 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 C11orf91Q3C1V1 193 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 HIBCHQ6NVY1 386 aaPredicted RBP11.08□□□□□ -0.64
UPF3B-201ENST00000276201 EPM2AIP1Q7L775 607 aaPredicted RBP11.08□□□□□ -0.64
UPF3B-201ENST00000276201 KCTD17Q8N5Z5 321 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 DIS3LQ8TF46 1054 aaKnown RBP11.08□□□□□ -0.64
UPF3B-201ENST00000276201 AP1M1Q9BXS5 423 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 SIX2Q9NPC8 291 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 RASAL2Q9UJF2 1139 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 STK24Q9Y6E0 443 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 CFBP00751 764 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 ITGA4P13612 1032 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 SKIV2L2P42285 1042 aaKnown RBP11.08□□□□□ -0.64
UPF3B-201ENST00000276201 ADAM9Q13443 819 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 EXOC3L4Q17RC7 722 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 CMPK2Q5EBM0 449 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 DENND2CQ68D51 928 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 GLIS3Q8NEA6 775 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 OLIG1Q8TAK6 271 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 RFFLQ8WZ73 363 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 ABHD16BQ9H3Z7 469 aa11.08□□□□□ -0.64
UPF3B-201ENST00000276201 NOP53Q9NZM5 478 aaKnown RBP11.08□□□□□ -0.64
UPF3B-201ENST00000276201 PDXKO00764 312 aa11.07□□□□□ -0.64
UPF3B-201ENST00000276201 ADCY6O43306 1168 aa11.07□□□□□ -0.64
UPF3B-201ENST00000276201 AKR1A1P14550 325 aa11.07□□□□□ -0.64
UPF3B-201ENST00000276201 NQO1P15559 274 aaKnown RBP11.07□□□□□ -0.64
UPF3B-201ENST00000276201 EDNRBP24530 442 aa11.07□□□□□ -0.64
UPF3B-201ENST00000276201 HOXA13P31271 388 aaPredicted RBP11.07□□□□□ -0.64
UPF3B-201ENST00000276201 GBP2P32456 591 aaPredicted RBP11.07□□□□□ -0.64
UPF3B-201ENST00000276201 PDE6CP51160 858 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms