RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SRGAP1Q7Z6B7 1085 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 GRAMD1CQ8IYS0 662 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CSGALNACT2Q8N6G5 542 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 OR8K3Q8NH51 312 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 QKIQ96PU8 341 aaKnown RBP eCLIP3.78□□□□□ -1.81e-6■■■■□ 23.5
SCN1A-221ENST00000641996 PIMREGQ9BSJ6 248 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 IRX2Q9BZI1 471 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ABCB6Q9NP58 842 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 INTS9Q9NV88 658 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 EVA1BQ9NVM1 165 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 DOCK3Q8IZD9 2030 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 MEI4A8MW99 385 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PMM2O15305 246 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 FESP07332 822 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 RECQLP46063 649 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 DSC3Q14574 896 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 DLGAP5Q15398 846 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 FAM47CQ5HY64 1035 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 INTS11Q5TA45 600 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 LRRC8BQ6P9F7 803 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PRR23BQ6ZRT6 265 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CNTROBQ8N137 903 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 RIPOR3Q96MK2 946 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 WDR24Q96S15 920 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PREBQ9HCU5 417 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 GPR34Q9UPC5 381 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CACNA1EQ15878 2313 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PSDA5PKW4 1024 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 H0Y626 953 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PSMD9O00233 223 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 SULT1B1O43704 296 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 TRIM16O95361 564 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 FGAP02671 866 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 VAMP1P23763 118 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 THOP1P52888 689 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 TMEM67Q5HYA8 995 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 COPS6Q7L5N1 327 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CHD1LQ86WJ1 897 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 USP7Q93009 1102 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF446Q9NWS9 450 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 M0QZ92 97 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 KRT36O76013 467 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 IFI30P13284 250 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CSF2RAP15509 400 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 FGFR2P21802 821 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 DDIT3P35638 169 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 HAAOP46952 286 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CAPZA1P52907 286 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PDPK2PQ6A1A2 396 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 FBXO38Q6PIJ6 1188 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 TBC1D1Q86TI0 1168 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CITED1Q99966 193 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 HPF1Q9NWY4 346 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PRRT4C9JH25 899 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 P4HBP07237 508 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PRKAR1BP31321 381 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PGDP52209 483 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ALDH6A1Q02252 535 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 NCAPHQ15003 741 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ABCB5Q2M3G0 1257 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PITRM1Q5JRX3 1037 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 AADACL4Q5VUY2 407 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 MOSPD2Q8NHP6 518 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ZNF408Q9H9D4 720 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 POLR3BQ9NW08 1133 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CLEC4AQ9UMR7 237 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 METTL21EPA6NDL7 271 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 TMEM191CA6NGB0 347 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 DPYSL4O14531 572 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 SYF2O95926 243 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ADARP55265 1226 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PLPP7Q8NBV4 271 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ACSF2Q96CM8 615 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CAAP1Q9H8G2 361 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 C20orf96Q9NUD7 363 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 TYW5A2RUC4 315 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ARHGEF9O43307 516 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 UBTFL1P0CB47 393 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 LCP1P13796 627 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 RXRAP19793 462 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PHC1P78364 1004 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ARHGAP4P98171 946 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 CYP4F3Q08477 520 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 IFI16Q16666 785 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 ZSCAN23Q3MJ62 389 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PLA2G4DQ86XP0 818 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 FAM26EQ8N5C1 309 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 SPATA18Q8TC71 538 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 PTCD3Q96EY7 689 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 C7orf25Q9BPX7 421 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 TCF7L2Q9NQB0 619 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 LARSQ9P2J5 1176 aaKnown RBP3.78□□□□□ -1.8
SCN1A-221ENST00000641996 DUSP12Q9UNI6 340 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 MED16Q9Y2X0 877 aa3.78□□□□□ -1.8
SCN1A-221ENST00000641996 SRGAP3O43295 1099 aa3.78□□□□□ -1.81
SCN1A-221ENST00000641996 CRYZL1O95825 349 aa3.78□□□□□ -1.81
SCN1A-221ENST00000641996 VARSP26640 1264 aaKnown RBP3.78□□□□□ -1.81
SCN1A-221ENST00000641996 HMOX2P30519 316 aa3.78□□□□□ -1.81
SCN1A-221ENST00000641996 SARSP49591 514 aaKnown RBP3.78□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms